Microsatellites /Tandem Repeats database

Genome: Bordetella avium 197N

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
174764TCGCCGAAATCGCGCTGGGGACGGTCGCCGAAGCTGCGCTGGGGGCGGTCACCGAAGTCGCGTTGGGGACGGTCGCCGAAGCTGCGCTGGGGACGATCGCCGAAGTCGCGTTGGGGACGGTCGCCGAAGCTGCGCTGGGGACGADesign primers
177026GGCCCTGGGCCTGGCCCGGGCCGTDesign primers
213122GGCCAGTTCGGGCAGTTCGGCCAGATCDesign primers
245295TGCGCGGCGCCGCGCCGCGCTGCCCDesign primers
308915GCCAAGGGCAGGCAGGGGCAGGCAAGGGCGDesign primers
325047CAATTGC-GGATTGC-GGATTGC-GGATTGC-GGATTGC-GGATTGCDesign primers
326653CAATTGC-GGATTGC-GGATTGC-GGATTGC-GGATTGC-GGATTGC-GGATTGC-GGATTGCDesign primers
327458CAATTGC-GGATTGC-GGATTGC-GGATTGC-GGATTGC-GGATTGCDesign primers
334102TCATCCG-CAATCCG-CAATCCG-CAATCCG-CAATCCG-CAATCCGDesign primers
417528GTTCAACGGCTGTTCAACAGCCGTACAACGACTDesign primers
417567CTAACC-AGAACC-AGAACC-AGAACC-AGAACC-AGAACCDesign primers
569608GGGCGGAAAGCTCGGTGGAAAGCTCGGCGGTAAGCTDesign primers
594758GACGACGAGGACGACGAGGACGAADesign primers
601343CCATGCCGCCCATGCCACCCATGCCGCDesign primers
756017GCCCGGAAAAGCCCGAAAAAGCGAGGAAAADesign primers
921669GCCGGGGCCGTGGCCGGCGCGGGGDesign primers
935396CATGAGCACGAGCAAGAGCATGAGDesign primers
1018428TCGCGCTGGGCGCGCTGGTCGGGCTGGDesign primers
1073561CGGCGCGCAGGTCGGCGAGCAGCTCGTCGCGCAGGGDesign primers
1184993CGG-CCG-CGG-CGG-CTG-CGG-CGG-CGG-CGGDesign primers
1313730GCGCGTGCCCGTGCGCATGAGCGTDesign primers
1387265TAACCAA-GAACCAA-TAACCAA-TAACCAADesign primers
1412573CCTGTGTGAATTCGGTGTGAATCCCGTGTGAAADesign primers
1445484ACCGTGATCGTGAGCGTGAACGTGDesign primers
1453374TGTCGATGACGAGGTCGATCTCGADesign primers
1509110AATGCGAACGCATATGCCAACGCATATGCGAACGCADesign primers
1535967GCTGCTGCGGCTGCTGATGCCGCTDesign primers
1619313CT-CC-CC-CC-CC-CC-CC-CC-CC-CC-CC-CC-CDesign primers
1636948ATG-AGG-AGG-AGG-ATG-AGG-AGG-AGGDesign primers
1637059CAGAAGCAGAAACATAAGTAGAAGDesign primers
1637178GCGGAGGAGGAGGCGGCGGCGGCGDesign primers
1637658GCGGAGGAGGAGACGGAGGAGGAGACGGAGDesign primers
1750532GCCCTGAAAACCGAAGCCCCAAAGACCGAAGCCCCAAAGACCGAADesign primers
1790312ACGGAAGAGCAGGCGGCGTCGTTGGAAGAGACGGCGGCGTCGATGGAAGAGCTGGCGTCGACGDesign primers
1820846AAGAAAGTAAGTGCAAGAAGAGTAAGTGCAAGAAGAGTAAGTGCADesign primers
2064814CC-GC-GC-GC-GC-GC-CG-GC-GC-CC-GC-GCDesign primers
2102804CGG-CGG-CGG-CGG-CGG-TGG-CGG-CGGDesign primers
2102848TCG-GCG-GCG-GCG-GCG-GCG-GCG-GCGDesign primers
2103043TCG-GCG-GCG-GCG-GCG-GCG-GCG-GCGDesign primers
2103281CGGCGGCGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGCGGCGGCGADesign primers
2106318CGCTG-CGCTG-CGGTG-AGCTG-CGCTTDesign primers
2255088GCGCAACTATTGAGCGCAACTACTGCGTGCAACTACTGADesign primers
2261596TCGTCCT-GCCCTCT-GCCCTCT-GCCCTCT-GCCCTCT-GCCCTCT-GCCCTCT-GCCCTCT-GCCCTCT-GCCCTCT-GCCCTCT-GCCCTCT-GCCCTCT-GCCCTCT-GCCCTCTDesign primers
2267483TGCGGTTTCGGCTGTGGTTTCGGCTGTGGTTTGGGCDesign primers
2592572TCAAACACGTTCAAGCACGTTTGAACACGTDesign primers
2602955CGGGC-CCGGC-CCGGC-CCGGC-CCGGCDesign primers
2872786CCACCGCCACCAGCACCGCCACCCDesign primers
2878790CATCATG-CCGCAAA-CCGCAAA-CCGCAAA-CCGCAAA-CCGCAAA-CCGCAAA-CCGCAAA-CCGCAAADesign primers
2915300AGGCCCCTTCTAGGCCCCGTCTACGCCCGTTCTDesign primers
3028926ACCACCACGACCATCACCACCATCDesign primers
3081953CAGGGCCAGGGGCAAGGCCACGGCDesign primers
3098537GCTGATCCTCT-ACTGATCCTCT-ACTGACCCTCTDesign primers
3171659GGCCGCTGAAAAAGCCGCAGCGGAAAAAGCTGCGGCAGAAAAAGCDesign primers
3182344TCAACGGCTGCTCAAGGGCCGCTCAAGGGCTGCDesign primers
3198374TTGCTGCATGGCTGCATTGCTGCGDesign primers
3229954TCCAGGGCACCCAG-CTCAGGGCACCCAG-CTCAGGGCACCCAG-CTCAGGGCACCCAG-CTCAGGGCACCCAG-CTCAGGGCACCCAG-CTCAGGGCACCCAG-CTCAGGGCACCCAG-CTCAGGGCACCCAG-CTCAGGGCACCCAG-CTCAGGGCACCCAG-CTCAGGGCACCCAGDesign primers
3328739TGGCGCTGGTGCTGGCCCTGCCGCDesign primers
3431983CTTCTTTCGAGACTTATTTCGAAACCTCTTTCGAAADesign primers
3461114CTGCGCGGCGCAGCGCTGGGCTGCTDesign primers

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