Microsatellites /Tandem Repeats database

Genome: Listeria monocytogenes strain R2-502

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
6296ATTTAAATTTGCACC-TCTTAAATCTGCACC-ATTTAAATCTGCACC-ACTTAAATCTGCACC-ATTTAAATCTGCACG-ACTTAAATCTGCACC-ATTTAAATCTGCACC-ATTTAAATCTGCACC-ATTTAAATCTGCACG-ACTTAAATCTGCACGDesign primers
6460AACTTAAATCTGCAC-CTCTTAAATCTGCAC-CTCTTAAATTTGCAC-CTCTTAAATTTGCACDesign primers
8061ATTATTATCTTTATTATCATTCTTATCDesign primers
8106ATTGTTCGGTG-GCTGTTCGGTG-GCTGTTCGGTGDesign primers
11384AAATTA-AAATTA-GAATTA-AAATCADesign primers
27620TTGCTTTTCCTTCTGCTTTTGCTTDesign primers
35308CTTTTTCATCCTTTTTCCCCCTTTTTTATGDesign primers
93922CTCTTTTACTATTTTACTTTTTTADesign primers
309505TTCTGCCCGTTTTCTGCCCGAAATCTGTCCGTTDesign primers
321153ATTTTAGTTAATTTTTGTGACTTTTCGTTADesign primers
396068TTTGCTTTTGATTTGTTTTTTATTTACTTTTAADesign primers
422618CAACAACACCAATAACAAAAACAADesign primers
706416AAACAGCTAAAGAAACAGCAAATGAAACAACAAAAGDesign primers
774479TAGTACCGCCAACACCAGTACCACCAACACCAGTGCCACCAACACDesign primers
784922GGGTCAACTGGATCAACCGGATTTACTGGATCAACCGGGTCAACTGGATTGACCDesign primers
996659TTTTATTTTTTTTGATTTCATTTGADesign primers
1258344GTGTTGGTGGTGGTATTGGTATTGDesign primers
1384102TTGGTGTTGGATTTGGCGTCGGATCTGGTGTTGGATTTGGCGTTGGGTDesign primers
1466333AGGTGTATGGTTGGTGTATAGTTGGTGTATAGTDesign primers
1576893TGACTGGGTCTACCGGGT-CTACTGGGTCTACCGGGT-CTACTGGGTCTACCGGATDesign primers
1576948TACCGGATC-TACCGGATC-TACCGGATC-TACCGGATC-TACCGGATC-TACCGGATC-TACCGGATCDesign primers
1600639GCATGTACATGTACATGTGCAAGTDesign primers
1627799GTTTTTGCTTTTCTTTTTGTTCTTDesign primers
1754499AAATAAACGGAAATAACCGAAAAAGAACGGDesign primers
1847077AACTGGTTT-TATAGGTTT-TATAGGTTT-TATAGGTTT-TATAGGTTT-TATAGGTTTDesign primers
1936612ATTAATTATATTTAATTATCATTTATCATADesign primers
2008560AA-AA-AC-AC-AA-AA-AA-AT-AC-AA-AA-AA-AG-AA-AADesign primers
2057707ATGTGTATCTTT-TGGTGTATCTTT-TGGTGTATTTTT-TGGTGTATTTTT-TGGTGTATCTTT-TGGTGTATTTTTDesign primers
2136997TAACTGGGTCTGGATCAACTGGATCTGGATTTACTGGATCCGGATDesign primers
2184464TTTTTCTGCTTTATCTGCTTTTTCTACDesign primers
2376516CAAGCAACAAAAACAGCAACAAAACAAGCAACAAAADesign primers
2402519TATGAAAAAACGATGAAAAAGCTTTAAAAAAACDesign primers
2428750AATAAGGAAAATAAAGGAAAAATCTGGAAADesign primers
2509051CATCGG-CATCGG-CATCCG-CATCAG-CATCCG-CATCAG-CATCCG-CATCAG-CGTCGG-CATCCG-CATCAG-CGTCGG-CATCAGDesign primers
2509483CGTCGG-CATCGG-CATCCG-CATCGG-CATCGG-CGTCAG-CATCCG-CATCCG-CATCGG-CATCGG-CGTCGG-CATCAG-CGTCAG-CATCCG-CATCGG-CGTCGG-CATCGG-CATCAG-CGTCAG-CATCGGDesign primers
2509604GTCAGCATCCGCATCGGC-GTCAGCATCCGCATCGGC-GTCAGCATCCGCATCCGCDesign primers
2509659TCCGCATCAGCGTCAGCGTCGGCATCAGCGTCGGCATCCGCATCAGCATCCGCADesign primers
2509714CAGCGTCCGCATCAGCGTCGGCATCCGCATCCGCATDesign primers
2509751AGCATCAGCGTCGGCGTCAGCATCGGCGTCAGCGTCAGCGTCAGCATCAGCGTCAGCATCCGCATCGGCGTCDesign primers
2509824GCATCGGCGTCCGCATCAGCGTCCGCATCGGCGTCADesign primers
2509887TCAGCATCGGCGTCAGCATCCGCATCCGCATCAGCGTCCGCATCAGCGTCGGCATCAGCGTCAGCATCCGCATCAGCGTCGGCGTCAGCATCCGCADesign primers
2509984CGGCGTCAGCAT-CGGCGTCAGCAT-CGGCGTCCGCATDesign primers
2510021CGCATCGGCGTCAGCATCGGCGTCCGCATCCGCATCDesign primers
2510058GCGTCAGCATCGGCGTCCGCATCGGCGTCAGCATCAGCGTCAGCATCGGCGTCAGCATCCDesign primers
2510138GTCAGCGTCGGCATCAGCGTCGGCDesign primers
2510190GCGTCGGCATCGGCATCAGCGTCAGCATCCGCATCGGCGTCAGCATCCGCATCGGCGTCAGCATCGGCGTCADesign primers
2510274GCATCGGCATCAGCGTCAGCATCAGCGTCGGCATCCDesign primers
2510337TCAGCGTCGGCATCCGCATCAGCGTCGGCATCAGCGTCAGCGTCGGCATCCGCATCAGCGTCAGCGTCAGCATCAGCGTCGGCGTCGGCGDesign primers
2510428CGGCATCCGCATCAGCGTCAGCATCCGCATCCGCATCAGCGTCGGCATCCGCATCAGCGTCAGCGTCAGCATCCGCATCCGCATCAGCGTCAGCATCCGCATCCGCATCGGCGTCGGCATDesign primers
2510556GCATCA-GCATCA-GCGTCA-GCGTCADesign primers
2655058TCAGCTTTTTCAGCAGCAGCTTTCTCGGCAGCAGCTTTGTCAGCCDesign primers
2740458TTTGTTTAATGTTTCTTCAATGTTTGTAAAATGDesign primers

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