Microsatellites /Tandem Repeats database

Genome: Escherichia coli O55:H7 str. RM12579

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
53242CTGGCGGTGGCGCTGTCGATGGCGDesign primers
63983AATGCTAACCTGGACGGTGCTACCCTGGACGGTGCTATCCTGGACDesign primers
78386GCAGCAACAGCAGCAGCGCCAGCADesign primers
168865CACCCT-CACCCT-AACCCT-CTCCCTDesign primers
423064AATGGTTCCTAATAATTCCTAATAATTCCTDesign primers
524128GGAAAAAATTGCGGAAGAAATTGCGAAAAAAACTGCGGAAATAATTGCDesign primers
945237AGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGDesign primers
945283TGCAAAAGCAGCAGCTGAAAAAGCCGCTGCAGCAAAAGCTGCCGCDesign primers
1230858GCGTCGCGAGCGTGGCGAACGTCGCGADesign primers
1277405ATTGGGATTGTGATTGGCATTGCGDesign primers
1283611TACAATATG-TTGAAGATG-TTGAAGATG-TTGAAGATG-TTGAAGATG-TTGAAGATG-TTGAAGATG-TTGAAGATG-TTGAAGATG-TTGAAGATGDesign primers
1439613ACAACGTGCAACAATGAGCAACAATGTGGADesign primers
1601797AGCAG-AGCAG-AACAG-AGCAT-ACCAGDesign primers
1849137TATTTTTAGTTTTATTTTTATTGTDesign primers
1850830ATAACAGC-AGAACAGC-AGAACAGC-AGAACAGCDesign primers
1996355TATTCTCTGTAGTAATCTCTGTTGTATTCTCTGTAADesign primers
2252427CGGGATCGGCATCGGCATCGGGTTDesign primers
2355342CCA-CCA-GCA-CCA-CCA-GCA-GCA-CCADesign primers
2422688ATGCGGCATT-TAGCGGCATT-TAGCGGCATT-TAGCGGCATTDesign primers
2438328TATTCTCTGTAGTAATCTCTGTTGTATTCTCTGTAADesign primers
2526244AT-AT-CT-TT-AT-CT-TT-AT-CT-TT-AT-CTDesign primers
2643653ATGTCGACGAACTTCGACGAATTTCGCCGADesign primers
2796658TTATATGCCTTTATTTGCTTTTTTATGCCADesign primers
3243571TTATTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTGDesign primers
3253068TCGGGTCTGGTTTCGGATCCGGTTTTGGGTCTGGTTDesign primers
3253112GGCTTCGGATTTGGGTTGGGATTTGGGTTGGGATTTDesign primers
3417297GTTGTGATGTTGTGTTGTTGTGTTDesign primers
3690672CCTTTGCTTTCTTTTCCTTGCGTTTDesign primers
4014064TT-TT-TG-TT-TT-AT-TT-TT-TG-TT-TT-TA-TT-TT-TTDesign primers
4140319TGCTGGCGCTGGTGCTGGTGCTTGDesign primers
4326393CCCTCACCCTAACCCTCTCCCTCADesign primers
4396339TTGTAG-TTGTAG-TAGTTG-TTGTTG-TTGDesign primers
4396710GCAGTTTCAGTTGCACTTGCAGCTDesign primers
4396936ACTCCCCAACGCCTTTTGACTCCCCAGCACCTTTGGACTCCCCAGCACCTTTGGDesign primers
4696129AATGCCAATGGCGATGCCAATTCCDesign primers
4984191ATGGGCGGCATGGGTGGCATGGGCGGCDesign primers
5088257ATTAAATAATCATCAGAA-GTTAAATAATCTACAGAA-GTTAAATAATCTACAGAA-GTTAAATAATCTACAGAADesign primers
5088330TTAAATAATATACAGGAG-TTAAATAATTCGCAGGAG-TTAAATAATTCGCAGGAG-TTAAATAATTCGCAGGAG-TTAAATAATTCGCAGGAG-TTAAATAATTCGCAGGAG-TTAAATAATTCGCAGGAGDesign primers
5113849GGTTGC-AGGAGC-AGGAGC-AGGAGC-AGGAGC-AGGAGC-AGGAGC-AGGAGC-AGGAGCDesign primers
5189690TCGGTACTGTTCTTGGCTTGTTTATCGGTACTGTCATTGACCTGTTTATCGATATTGTCATTGGCTTGTTTATCGGTACTGTCATTGGCCTGTTTADesign primers
5190197GGTATTTGA-GGTGTTCCA-GGTATTCCA-GGTATTCCA-GGTATTCCA-GGTATTCCADesign primers
5191384TATATCTTTATCTTTATCTTTATCDesign primers
5242833AAGCGGCGAAAGCGGTGAAAGCGGCAADesign primers

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