Microsatellites /Tandem Repeats database

Genome: Helicobacter pylori F32

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
6439CTACTACTACCACTACTGCTACTADesign primers
89453TA-TA-TA-TA-TA-TT-TT-TA-TA-TA-TA-AADesign primers
92100TATGGCATG-TATGGCATG-TATGGAATGDesign primers
93072AATACCGATACCGGCAACACAGACACCGGCAATACTGATACCGGTDesign primers
134793CTTTTTGTTTTTCTTGTTCTGTTTDesign primers
180055CCTCTTTAGGCTCCTCTTTAGTTTCTTCTTTAGCCTDesign primers
193290ACCACACCCCACCAAACCACACCCCDesign primers
224905TTTTCTTTTGCATGCTCTTTTTTTGCATGCTTTTCTTCTATATGCDesign primers
271412AAAAGGAAAAGCAAAAAGAAAAGGDesign primers
298206CCCTAATATCCCCAATATCCCTAATATDesign primers
319174GATGGGGGCGATGGAGGCGATGGGGGCDesign primers
331869TT-TT-TT-CT-TT-TT-TT-AA-CT-TT-TT-CT-TT-TT-TTDesign primers
338967AGAGATTATGATGATTTGAGG-GTTAATTATGATGATTTGAGG-GTTAATTATGATGATTTGAGG-GTTAATTATGATGATTTGAGG-GTTAATTATGATGATTTGAGG-GTTAATTATGATGATTTGAGGDesign primers
358396TCATTGGTTTGAGAGATCGCATGTGTTTGAGAGATCGCATGTGTTTGAGAGATCDesign primers
388980TCAATTTCCTCTTCAAATTCATCTTCAAATTCTTCTDesign primers
390918TGAATGAT-CGAATGAT-TGAATGAT-TGAATGATDesign primers
390973TGAATGATCGAATGATTGAATGATTGGATGATTGGATGATTGGATGATTGGATGATTGGATGATDesign primers
391108GTTAATGATATGTTTTAA-TGAAATGATATGTTTTAA-TGAAATGATATGTTTTAA-TGAAATGATATGTTTTAADesign primers
462505AAGAAAGAAAGACAGAAAGAAAAADesign primers
476639TGGGGCTTTTGATCAGAGAGCTTTTGATCAAGGGGTTTTTGTTCADesign primers
479329TGGCATGCAAAGTTTCATGCAAAGTTTCATGCAAAGDesign primers
487138CTTTTCTTTTTTAAACTCTTTTCTTTTAAAGCTTTCTTTTTTTAADesign primers
487184ACTTTTTTTTTTGAAC-TCTTTTTTTTTTGAAC-TCTTTTTTTTTTGAACDesign primers
487233CTTTTTTTTTGAACTCTTTCTTTTTTGAACTCTTTCTTTTTTGAACTCTTTCTTTTTTGAACTCTTTCTTTTTTGAACTCTTTCTTTTTTAAACTCDesign primers
487502TTTTTGCTGATTTTTCACTGATTTTTTACTGACDesign primers
544609GCTTTTTTTAGCTTCTTCTAACTTTTTTTTDesign primers
545161GCTTTTTTTAGCTTCTTCTAACTTTTTTTTDesign primers
548524TC-TT-TT-CT-TT-TT-TC-TC-TT-TT-AT-CT-TT-TTDesign primers
594520GCGTTTATGCGTTTGTGCGGTTATDesign primers
600040TTTGGCGGA-GTTGGCGGA-GTTGGCGGA-GTTGGCGGADesign primers
648692CTCGTGGCAAAATACGATGAT-CTCACAGGAAAATACGATGAT-CTCACAGGAAAATACGATGAT-CTCACAGGAAAATACGATGAT-CTCACAGGAAAATACGATGAT-CTCACAGGAAAATACGATGAT-CTCACAGGAAAATACGATGAT-CTCACAGGAAAATACGATGAT-CTCACAGGAAAATACGATGAT-CTCACAGGAAAATACGATGAT-CTCACAGGAAAATACGATGATDesign primers
651684ATTTGCGCGATT-TTTTGCGCGATT-TTTTGCGCGCTTDesign primers
724553CTTCTTTATTTTTCAGTTCTTTATTCTTTAATTCTTTATTCTTTADesign primers
753296AAGCATGACAAAAAACATGGCAAAAACCATGATAAADesign primers
801725AACAAAAACAACAAAAAAAACAATDesign primers
823972GCTTTTAATTCTGTGTTTAATTCTGTGTTTAATTCTDesign primers
834024GTGTTTAAATTG-TCTATTAAATTG-TCTATTAAATTG-TCTATTAAATTG-TCTATTAAATTG-TCTATTAAATTG-TCTATTAAATTG-TCTATTAAATTGDesign primers
841292TTATTAAAATT-ATCTTAAAATT-ATCTTAAAATT-ATCTTAAAATTDesign primers
878655GCTTTTAATTCTGTGTTTAATTCTGTGTTTAATTCTDesign primers
939158CACAAGCGCCTCCACGAACGCCTCCACAAACGCTTCDesign primers
939372TA-GA-AA-AA-GA-AA-TA-GA-AA-AA-GA-AADesign primers
1003087CAAGAGGTGGTGTGAT-ATAGAAGTGGTGTGAT-ATAGAAGTGGTGTGAT-ATAGAAGTGGTGTGATDesign primers
1024138TTTATTTTTTCTTTTTTATTGTTTAGTTDesign primers
1033983CTCTTTTTAAAGCTTTTTAACCCTTTTTAGDesign primers
1053814TTAGAAACCCCA-CAAGAAACCCCA-CAAGAAACCCCADesign primers
1103610TTTTCTAAATTTTCTAAGGTTTCTAAADesign primers
1248762TAACCCATATAAACCATATAAGCCATADesign primers
1256707TTCAAAAAAAAAAGTTTTAAAAAAAGAAAGCTTTAAAAGAAAAGAGTTDesign primers
1317711GCTATTTTTAGGGATTTTTAGAGATTTTTADesign primers
1318898AATTATTA-TGTATTTA-TGTATTTA-TGTATTTA-TGTATTTA-TGTATTTA-TGTATTTA-TGTATTTA-TGTATTTA-TGTATTTA-TGTATTTA-TGTATTTADesign primers
1336445AACCCAAGAAAGAAGAGCCAAAAAAAGAAGAACCCAAAAAAGAGGDesign primers
1336495AAACCT-AAGCCT-AAACCC-AAACCC-AAGCCT-AAGCCT-AAGCCT-AAACCC-AAACCCDesign primers
1366039AGCGGAATAAAGAAT-AAAAGAATAAAGAAT-AAAAGAATAAAGAAT-AAAAGAATAAAGAATDesign primers
1366100AAAGAATA-AAAGAATA-AAAGAATA-AAAGAATA-AAAGAATA-AAAGAATA-AAAGAATA-AAAGAATA-AAAGAATA-AAAGAATA-AAAGAATADesign primers
1371134AAAATAAAACATATCATT-TCATTAAAACATATCATT-TCATTAAAACATATCATT-TCATTAAAACATATCATT-TCATTAAAACATATCATTDesign primers
1371289TGGCATCC-AATCATCC-AATCATCC-AATCATCC-AATCATCC-AATCATCCDesign primers
1371338ATCATTCAATCATTCGATCATTCADesign primers
1371382GCAATCAT-TCAATCAT-TCAATCATDesign primers
1392765GCTGAACAACAAGCAGAGCAACAAGCTCAACAACAADesign primers
1411674AAAACC-TAAACC-TAAACC-CAAACC-AAAACCDesign primers
1446975TGCTTTTCTTTCTTCATGGCTTTTCTTTTTTCATGATTTTTCTTTCTTCATDesign primers
1448094ACACTCGCAATAAAACTCGCAATAAAAATCGCAATADesign primers
1541113TTTTTTTTATTTTGTTATTTTTGTTDesign primers

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