Microsatellites /Tandem Repeats database

Genome: Mycobacterium canettii CIPT 140010059

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
81564TCGGTGGAC-CCGGTGGAC-CCGGTGGAC-CCGGTGGAC-CCGGTGGAC-CCGGTGGACDesign primers
248193GCCGTCGCAAA-CCCGTCGCAAA-CCCGTCGCAAADesign primers
341391GCGCCGCCG-GCGCCGCCG-GCGCCGCCGDesign primers
342737CCGCCGTTG-CCGCCGTTG-CCGCCGTTGDesign primers
344751CGCCGCCGG-CGCCGCCGG-CGCCGCCGGDesign primers
345725TGCCGCCGG-TGCCGCCGG-TGCCGCCGGDesign primers
346499CTCCGCCGT-CTCCGCCGT-CTCCGCCGTDesign primers
373393GCCGGCGGG-GCCGGCGGG-GCCGGCGGGDesign primers
379697ACCGGTGTTGAAGCTGCCGGTGTTGAAGCTACCGGTGTTGAAGCTDesign primers
435139ATTGCCGAGGTTTGCACTGCCGAGGTTTGCACTGCCGAGGTTTGCDesign primers
438970GCTGCCGGTGTTGCCGATGCCGGTGTTGCCGCTGCCGGAGTTGCCDesign primers
482086TTGTGGGCC-TTGTGGGCC-TTGTGGGCCDesign primers
541810GTTGCCGCTGCCGGTGTTGCCGCTGCCGATGTTGCCGCTGCCGGTGTTGCCGCTGCCGATDesign primers
576554AAGAAGGCTGCTCCGGCCAAGAAGGCCGCTCCGGCCAAGAAGGCCGCTCCGGCCDesign primers
850252CCGGCGGGT-CCGGCGGGT-CCGGCGGGTDesign primers
850334CGGCTCCGG-CGGCTCCGG-CGGCTCCGGDesign primers
850401GCCGGCGGG-GCCGGCGGG-GCCGGCGGGDesign primers
850433CGGCAACGG-CGGCAACGG-CGGCAACGGDesign primers
851402CGGCAACGG-CGGCAACGG-CGGCAACGGDesign primers
935866TCGCCGCCG-TCGCCGCCG-TCGCCGCCGDesign primers
972376GCGGGTGGTGCCAGTTCGGCGGGCGCGGGTGGCGCCAGGTCGGCGGGCGCGGGTGGCGCCAGTTCGGCGGGCGCGGGTGGCGCCAGGTCGGCGGGCDesign primers
972566CGGGTGGTGCCAGGTCGGCGGGCGCGGGTGGCGCCAGTTCGGCGGGCGCGGGTGGCGCCAGGTCGGCGGGCGDesign primers
1132460GCCGGGGATGCCGAT-GCCCGGGATGCCGAT-GCCCGGGATGCCGAT-GCCCGGGATGCCGATDesign primers
1202829TTGCCGCCG-TTGCCGCCG-TTGCCGCCGDesign primers
1202883TTGCCGCCG-TTGCCGCCG-TTGCCGCCGDesign primers
1229007CGGTGCCGG-CGGTGCCGG-CGGTGTCGG-CGGTGCCGG-CGGTGTCGG-CGGTGCCGGDesign primers
1234955AACGGCGGC-AACGGCGGC-AACGGCGGCDesign primers
1359873CGGCGA-CGGCGA-CGGCGA-CGGCGADesign primers
1635813CGGTACCGGTCCGCCCGGTATCGGTACCGGTCCGCCGGGGATTGGTACCGGTGCGCCCGGTATDesign primers
1641473CGCCGTTGC-CGCCGTTGC-CGCCGTTGCDesign primers
1654503TGCCGCCGT-TGCCGCCGT-TGCCGCCGTDesign primers
1655413CCCGCCGGC-CCCGCCGGC-CCCGCCGGCDesign primers
1657225CCCGCCGGG-CCCGCCGGG-CCCGCCGGGDesign primers
1660308GCCGCCGTT-GCCGCCGTT-GCCGCCGTTDesign primers
2031911GGCGCCGCC-GGCGCCGCC-GGCGCCGCCDesign primers
2033060GCCGCCGTT-GCCGCCGTT-GCCGCCGTTDesign primers
2127138CCGCCGTTG-CCGCCGTTG-CCGCCGTTGDesign primers
2127609CCGCCGTTG-CCGCCGTTG-CCGCCGTTGDesign primers
2535405GCCCGCCCCCAA-GCCCGCCCCCAA-GCCCGCACCCAADesign primers
2661260CAGTGCCAA-CAGTGCCAA-CAGTGCCAADesign primers
2752043GGCGGGGCC-GGCGGGGCC-GGCGGGGCCDesign primers
2752367GCCGGCGGG-GCCGGCGGG-GCCGGCGGGDesign primers
2871199CCACCGGCA-CCACCGGCA-CCACCGGCADesign primers
2871434CACCGTTGC-CACCGTTGC-CACCGTTGCDesign primers
3621597ACGCTTGTCG-GCGCTTGTCG-GCGCTTGTCGDesign primers
3798628CCAACCCGACATTGCCAAACCCGACATTGCCCAACCCGACATTGTDesign primers
3800401CCAACCCGACATTGCCAAACCCGACATTGCCCAACCCGACATTGTDesign primers
3804858CCGCCGTCA-CCGCCGTCA-CCGCCGTCADesign primers
3806384GTTGCCGCC-GTTGCCGCC-GTTGCCGCCDesign primers
3808807TGCCGCCGT-TGCCGCCGT-TGCCGCCGTDesign primers
3849382GGCAACGGT-GGCAACGGT-GGCAACGGT-GGCAACGGTDesign primers
3849513CGGCGGCGA-CGGCGGCGA-CGGCGGCGADesign primers
3849628GGCAACGGC-GGCAACGGC-GGCAACGGCDesign primers
3985758CCGGCGGCA-CCGGCGGCA-CCGGCGGCA-CCGGCGGCADesign primers
3986190CCGGCGGGG-CCGGCGGGG-CCGGCGGGG-CCGGCGGGGDesign primers
3987130CGGCAACGG-CGGCAACGG-CGGCAACGGDesign primers
3987317GGCAACGGC-GGCAACGGC-GGCAACGGCDesign primers
3991167CGGCGGCAC-CGGCGGCAC-CGGCGGCACDesign primers
3994368CGGCGGGAC-CGGCGGGAC-CGGCGGGACDesign primers
3999378GGCAACGGC-GGCAACGGC-GGCAACGGCDesign primers
3999723GGCAACGGC-GGCAACGGC-GGCAACGGCDesign primers
4001684CGGCAACGG-CGGCAACGG-CGGCAACGGDesign primers
4002385CCGGCGGCA-CCGGCGGCA-CCGGCGGCADesign primers
4089714GCCGCCCGC-GCCGCCCGC-GCCGCCCGCDesign primers
4158767GCCGGCGGG-GCCGGCGGG-GCCGGCGGGDesign primers
4159351CGGCAACGG-CGGCAACGG-CGGCAACGG-CGGCAACGGDesign primers
4163208CGGCGGCGC-CGGCGGCGC-CGGCGGCGCDesign primers
4163674GGCGGGGCC-GGCGGGGCC-GGCGGGGCCDesign primers
4164111CGGCGCCGG-CGGCGCCGG-CGGCGCCGGDesign primers
4200221GGACCACCGCCCGGCTATGGCCCACCGCCCGGCTATGGCCCACCGCCCGGCTATDesign primers
4230003ACCCGGCAT-ACCCGGCAT-ACCCGGCATDesign primers
4429464GGGGTTCCCGGGGTGATC-GGGGTTCCCGGCGTGATC-GGGGTTCCCGGCGTGATC-GGGGTTCCCGGCGTGATCDesign primers
4429588CCGGTGTGC-CCGGTGTGC-CCGGTGTGCDesign primers

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