Microsatellites /Tandem Repeats database

Genome: Croceibacter atlanticus HTCC2559

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
25608AAAAATAGAAATAAAATTAAAAACDesign primers
51211TTGTTAATTATAGTTAAATATTAGTAATTADesign primers
244701TAAATTTAAAATTAAAATTAATTTDesign primers
291656TGG-TGG-CGG-CGG-TGG-CGG-CGG-TGG-CGGDesign primers
330397TCTTCTTTTTTCGGCTCAACTTTTTTAGGCGCTTCTTTTTTAGCCDesign primers
363243GCGACC-GCCACC-GCCACC-GCCACCDesign primers
559053CTGCAC-CTGCAC-CAGCAC-CAGCACDesign primers
647299AACCAACACCAATACCAAAACCAADesign primers
769783TTGCTGTTGTTGTTGCAGTTGTTGDesign primers
796962CTTTAGGTTTAGATTTAGCTTTGGDesign primers
896905TATTGTGTTACATTTGTGTTACAATTGTGTAACDesign primers
901913TGACAATTT-CGACAATTT-CGACAATTTDesign primers
913212TGA-TGA-TGA-GGA-TGA-TGA-GGA-TGADesign primers
941420ATTAGTTATTTAGTTAATTATTTADesign primers
1004740TGGAGATGATGGCGGTGATGATGGTGGAGACAATGGDesign primers
1053113GCTAAAGCTGAAGCTGAAGCAAAADesign primers
1053999TTAAATTAAGATAAATTAACATAAADesign primers
1085937GTGGCGGTGGCTTTGGCGGCGGCGDesign primers
1127662GGAAATGGTAATGGAAACGGAAACGGTAATDesign primers
1167212TTTATTT-TCACTAT-TCACTAT-TCACTAT-TCACTAT-TCACTAT-TCACTAT-TCACTAT-TCACTAT-TCACTAT-TCACTAT-TCACTATDesign primers
1199519TTTGGAAATAGGCATTTGGGAATAGGGATTTGGGAATAGGGADesign primers
1203068TTGAACTCGAACTTGAAAATGAACTTGAAADesign primers
1203457TTTCAATTTCGAGTTCAATTTCAADesign primers
1266308TGGTGGTGATGGTGGTCGTGGTGGDesign primers
1319358TAGTGTGC-TTGTGTGC-TTGTGTGC-TTGTGTGCDesign primers
1396031TGAAGATGTAGATGAAGTTGCAGADesign primers
1449167TTTTTTTATTCTTTTTCTTTTTTTADesign primers
1462679TTATTACCACATTTTACCACTTTTTACCACDesign primers
1606850GGTTACGGCTACGGTTATGGTTATDesign primers
1623809CAC-AAC-AAC-AAC-AAC-AAC-AAC-AACDesign primers
1627657TCTTAAGTATAGCTTAAGTATATCTAATGTATADesign primers
1678178ATGGTG-TTGGTG-CTGGTG-CTGGTGDesign primers
1716397GGTGGTGCTGGTGGCGGTGGCGGTGGCGGTDesign primers
1738970TGAAGATGAATATGTAGATGTAGADesign primers
1762151TTTACTTAAAATTACTGAAATTTAATTGAADesign primers
1780766AAGCAGATGCAGAAGCTGCAGCAGDesign primers
1859078GTGATGATGATGGTAATGGTGGTGDesign primers
2170202TAACCTTTTTACCTTTTAAGCTTTDesign primers
2305717ATGATGTTGATGATTATGATGATGDesign primers
2652680TTTTCTTTTATTGTCTTTTAGTTTCDesign primers
2709995GAAATGAATGAAGAAATGAACGAAGAGATGAAAGAADesign primers
2811418AGATTGT-TGATTGT-TGATTGT-TGATTGTDesign primers
2812065TGGGGAT-TGGGGAT-TAGGGAT-TTGGGATDesign primers
2812121TTGGGGATTTGGGATTGGGGATTTGGGADesign primers
2814218TTGAATATATTTCAATATTTTAAAATATATDesign primers
2821024ATTTAAAAATATTTTCAAATATTGAAAAAGDesign primers
2873128ATTATATTAAATAATATTAAATTATDesign primers
2876571TTTTAAACCTC-AGTTAAACCTC-AGTTAAACCTCDesign primers
2877887TAAAGTCTTTTAAATGCTTTTACAGTTTTTDesign primers

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