Microsatellites /Tandem Repeats database

Genome: Pelotomaculum thermopropionicum SI

Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
42922CGGTGAGAAAAAAACGGCTGAGAAAAAAACGGCTGAGAAAAAACCDesign primers
74978AGGACCAGGCCCAGGGCCAGGATCDesign primers
82927CCGCAG-CTGCAG-CCCCAG-CCCCAG-CCCCAG-CCCCAG-CCCCAGDesign primers
87584GCTTAAGGCGCCGTAAGGCGCCTTAAGCCGDesign primers
100424TATTTATATATATATTTTTATATADesign primers
238972GGCCCTGGCCCGGGCGCTGGCCATDesign primers
242545CAGGGACTGGAGGGACTGCTGGGACTGDesign primers
265115CGGTAGTCAGTAGTCCGTAGTCAGTAGTDesign primers
266980CAGTAGTCGGTAGTCAGTAATCGGTAGTDesign primers
268041GGTAGTCGGTAGTGAGTAGTCAGTAGTCDesign primers
268766TCAGTAG-TCAGTAG-TGAGTAG-TCAGTAGDesign primers
307432TCAGAAGTCAGAGGTCAGAAGTCAGAAGDesign primers
334699CCGACTACCGACAACCGACAACCGGCTADesign primers
340946AGTAGTCAGTAGTGGGTAGTCAGTAGTCDesign primers
341018CCGACTA-CCGACAA-CCGACAA-CCGACTADesign primers
371980CCTGGGTCTTTGTCTTTTGGGTCCTTGTCTTTTGGATCTTTGTCTDesign primers
378212AAAAACACAAGGACCCAAAAGACAAGGACCCAAAAGACAAAGACCDesign primers
391356ATGTGACA-GTGTGACA-GTGTGACADesign primers
401473GCG-GCG-GAG-GCG-GTG-GCG-GCG-GCGDesign primers
411309GCCGG-GCCGG-TCCGG-GCCAG-GCCCGDesign primers
437470GGAACGCCTGGAGGCCCGCAT-GGACAGGCTGGAGGACCGCAT-GGACGGCCTGGAGGCTCGCAT-GGACAGGCTAGAGGCCCGCAT-GGACAGGCTAGAGGCCCGCAT-GGACAGGCTGGAGGACCGCAT-GGACGGCCTGGAGGCCCGCATDesign primers
457377GGGCCGCGGCCGGTGCCGGGGCCCDesign primers
507884TATTTTACTTTATTATTTTTTATTCDesign primers
617797ATTGCAGGATGGCAGGATGGCAGGDesign primers
627803TAAAA-TAAAA-TATAA-AAAAA-TGAAADesign primers
665060TAGTAATGTT-ATGTAATGTT-ATGTAATGTTDesign primers
1009547AAAGGCAGAGGCACAGGCACAGGCDesign primers
1048785CGGTAGTCAGTAGTCCGTAGTCAGTAGTDesign primers
1050650CAGTAGTCGGTAGTCAGTAATCAGTAGTDesign primers
1051448GGTAGTCGGTAGTGAGTAGTCAGTAGTCDesign primers
1052173TCAGTAG-TCAGTAG-TGAGTAG-TCAGTAGDesign primers
1252072GCCTGGGTCTTTGTC-TTTTGGGTCTTTGTC-TTTTGGGTCTTTGTCDesign primers
1441688CCGCCGCTGCCGCCTCCGCCGCCTDesign primers
1447144GGTTACTTTGGTTACTTCGGTAACTTTDesign primers
1447262AAAGTTACCAAAGTTACCGTGGTTACCAAAGTTACCGTAGTTACCAAAGTTACCDesign primers
1472128ATTTTAAAAATTATTTAAATAATTATTTTATTAATTDesign primers
1552001ACAACCAGCACAACGAGCGCAACCAGCDesign primers
1615680TTCGTCCTTTGGTCCTTCCGTCCTDesign primers
1626928AATATTAAAAAATTAAAATAGTAADesign primers
1632961AAACGTAAGCGTAAAAGTAAGCGTDesign primers
1781612AATTGGTTAGAATTTGGTTAGAATTTGTTTAGADesign primers
1857308TTATAAAAACTTTTTAAAAACCTAATAAAAGCTDesign primers
1945269ACCCGGTCACCCGGTAACCCAGTCDesign primers
1957692TTCCTCCACTTGCCACCACTTTCCACCACTDesign primers
2005450CCTTCGCCTTTGCCTTCGCCTTTGDesign primers
2214650GCATGGAAGGCA-GGCTGGAAGGCA-GGCTGGAAGGCA-GGCTGGAAGGCADesign primers
2435870TTTATGCCTTGC-TTTATGCCTTGC-TTTAGGCCTTCC-TTTATGCCCTCCDesign primers
2470280TAAGGCCGGT-GGAGGCCGGT-GGAGGCCGGTDesign primers
2475457TGCCTTCTTTTATTCCTTCCTTTATCCCTTCTTTTATGCCTTCCTTTADesign primers
2527780AGCAATACCAATAGCATTAACAATDesign primers
2544815TTACTTTATTGCTTTATTACTTTADesign primers
2573819CGTAGTATTGC-CGATAAATTGC-CGTTATTTTGC-CGATAAATTGC-CGATAAATTGC-CGATAAATTGCDesign primers
2576760CCTTCAGTCCGGCCTTTAGCCCGGCCTTCAGCCCGGDesign primers
2611363TCTGGGATGTCGCTATTGGTACGCAGTAATGTCGCTATTGGTACGCAGTAATGTCGCTATTGGTACDesign primers
2675502CCTGGGCCTTTGTCTTTTGGGTCTTTGTCTTTTGGGTCTTTGTCTDesign primers
2676537TTCTTTTTCTTGTTCATTTTCATTDesign primers
2712034TCATGCCGC-CCATGCCGC-CCATGCCGC-CCATGCCGCDesign primers
2733092GTGGCCGTGACCGTGCCCGTGGGCDesign primers
2920272TCGGTCGTCGGACGTCAGTCGTCAGTCGDesign primers
2951655GCCCCGGCCCAGGCGCCGGCCCTGDesign primers

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