Microsatellites /Tandem Repeats database

Genome: Actinoplanes friuliensis DSM 7358

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
40832AACAAGGGC-AACAAGGGC-AACAAGGGCDesign primers
68017CGACCGACC-CGACCGACC-CGACCGACCDesign primers
459942ACCGCG-ACCGCG-ACCGCG-ACCGCGDesign primers
547054CGCCCGGCCCAGCGGCTGGGTTTG-CGCCCGGCCCAGCGGCTGGGTTTG-CGCCCGGCCCAGCGGCTGGGTTTG-CGCCCGGCCCAGCGGCTGGGTTTGDesign primers
866602CCGGACCACAGCTC-CCGGACCACAGCTC-CCGGACCACAGCTCDesign primers
918506AACCGCCACGACCGG-AACCGCCACGACCGG-AACCGCCACGACCGG-AACCGCCACGACCGG-AACCGCCACGACCGG-AACCGCCACGACCGGDesign primers
1099105CAGCGCGGCC-CAGCGCGGCC-CAGCGCGGCC-CAGCGCGGCCDesign primers
1099146AGCGCGCCCAGCGCGGTC-AGCGCGCCCAGCGCGGTC-AGCGCGCCCAGCGCGGTCDesign primers
1099973TGGGCG-TGGGCG-TGGGCG-TGGGCG-TGGGCG-TGGGCGDesign primers
1182406GCGCCGGCCGTGCT-GCGCCGGCCGTGCT-GCGCCGGCCGTGCTDesign primers
1182511CCGCA-CCGCA-CCGCA-CCGCA-CCGCADesign primers
1182909TGCCCGCCCCGCCT-TGCCCGCCCCGCCT-TGCCCGCCCCGCCTDesign primers
1278184CCGGCACGGCCCGCCCA-CCGGCACGGCCCGCCCA-CCGGCACGGCCCGCCCADesign primers
1366938CCGGCCACC-CCGGCCACC-CCGGCCACC-CCGGCCACC-CCGGCCACC-CCGGCCACC-CCGGCCACCDesign primers
1432149CATCTCGG-CATCTCGG-CATCTCGGDesign primers
1492144CGGCA-CGGCA-CGGCA-CGGCA-CGGCA-CGGCADesign primers
1507282CCGGGCAACGGCGGT-CCGGGCAACGGCGGT-CCGGGCAACGGCGGT-CCGGGCAACGGCGGT-CCGGGCAACGGCGGT-CCGGGCAACGGCGGT-CCGGGCAACGGCGGT-CCGGGCAACGGCGGT-CCGGGCAACGGCGGT-CCGGGCAACGGCGGTDesign primers
1520938GGCCGCGCTGTTTCGCGG-GGCCGCGCTGTTTCGCGG-GGCCGCGCTGTTTCGCGG-GGCCGCGCTGTTTCGCGGDesign primers
1598351GGACCTGCTGGTTCTTC-GGACCTGCTGGTTCTTC-GGACCTGCTGGTTCTTCDesign primers
1670562GCCGGT-GCCGGT-GCCGGT-GCCGGTDesign primers
1710768CCGAA-CCGAA-CCGAA-CCGAA-CCGAA-CCGAA-CCGAADesign primers
1711346CGAACCG-CGAACCG-CGAACCG-CGAACCG-CGAACCG-CGAACCG-CGAACCG-CGAACCG-CGAACCG-CGAACCG-CGAACCG-CGAACCG-CGAACCG-CGAACCGDesign primers
1744981ACCGATCGCTCAACCGGA-ACCGATCGCTCAACCGGA-ACCGATCGCTCAACCGGADesign primers
1753775CCGGACCCGTGAC-CCGGACCCGTGAC-CCGGACCCGTGACDesign primers
1754378CCGCGAT-CCGCGAT-CCGCGAT-CCGCGAT-CCGCGAT-CCGCGATDesign primers
1809572GCC-GCC-GCC-GCC-GCC-GCC-GCC-GCCDesign primers
1941216CAGGTAGGTCAGGGCCG-CAGGTAGGTCAGGGCCG-CAGGTAGGTCAGGGCCG-CAGGTAGGTCAGGGCCG-CAGGTAGGTCAGGGCCG-CAGGTAGGTCAGGGCCG-CAGGTAGGTCAGGGCCGDesign primers
1941496GGCCCAGAGCGAGTCAC-GGCCCAGAGCGAGTCAC-GGCCCAGAGCGAGTCACDesign primers
2018119GGCGGCGCGGAGTGCACG-GGCGGCGCGGAGTGCACG-GGCGGCGCGGAGTGCACG-GGCGGCGCGGAGTGCACGDesign primers
2018943GTCGGAAGCACGCGG-GTCGGAAGCACGCGG-GTCGGAAGCACGCGG-GTCGGAAGCACGCGGDesign primers
2019078GTCAGAAGACCGCGG-GTCAGAAGACCGCGG-GTCAGAAGACCGCGG-GTCAGAAGACCGCGG-GTCAGAAGACCGCGG-GTCAGAAGACCGCGGDesign primers
2066229GAGCCCGGCCCGGCCACC-GAGCCCGGCCCGGCCACC-GAGCCCGGCCCGGCCACCDesign primers
2127528CGGTTGCC-CGGTTGCC-CGGTTGCC-CGGTTGCC-CGGTTGCCDesign primers
2184012CCGCCGACCATGTCT-CCGCCGACCATGTCT-CCGCCGACCATGTCTDesign primers
2184058CGCCGGCGCTGTCTC-CGCCGGCGCTGTCTC-CGCCGGCGCTGTCTCDesign primers
2271654CGCCCTGCGTCCTTGCGCCG-CGCCCTGCGTCCTTGCGCCG-CGCCCTGCGTCCTTGCGCCGDesign primers
2311658TCAGGCCGGACGTGGC-TCAGGCCGGACGTGGC-TCAGGCCGGACGTGGC-TCAGGCCGGACGTGGC-TCAGGCCGGACGTGGCDesign primers
2374312AGCTTGGCCTGCTGG-AGCTTGGCCTGCTGG-AGCTTGGCCTGCTGG-AGCTTGGCCTGCTGGDesign primers
2452353CGCCGACCG-CGCCGACCG-CGCCGACCG-CGCCGACCGDesign primers
2478822GGCGGACCC-GGCGGACCC-GGCGGACCC-GGCGGACCCDesign primers
2619351GG-GG-GG-GG-GG-GG-GG-GG-GG-GG-GG-GG-GG-GGDesign primers
2883813TGGCCGCTGCCGGCG-TGGCCGCTGCCGGCG-TGGCCGCTGCCGGCG-TGGCCGCTGCCGGCGDesign primers
3140826ACCAGGCCGAGC-ACCAGGCCGAGC-ACCAGGCCGAGC-ACCAGGCCGAGCDesign primers
3707395GCTCGGCCCGCTTCCGG-GCTCGGCCCGCTTCCGG-GCTCGGCCCGCTTCCGG-GCTCGGCCCGCTTCCGG-GCTCGGCCCGCTTCCGGDesign primers
3834193CTCAGTCCGC-CTCAGTCCGC-CTCAGTCCGC-CTCAGTCCGCDesign primers
4341589CGCCGGGT-CGCCGGGT-CGCCGGGT-CGCCGGGTDesign primers
4539462TGGGCGCGCACAGCTGAAGT-TGGGCGCGCACAGCTGAAGT-TGGGCGCGCACAGCTGAAGTDesign primers
4539524GGCGCGCAGCGCTGGGGTT-GGCGCGCAGCGCTGGGGTT-GGCGCGCAGCGCTGGGGTTDesign primers
4548831CGAGGA-CGAGGA-CGAGGA-CGAGGA-CGAGGADesign primers
4555101TCGGCGGGCGGT-TCGGCGGGCGGT-TCGGCGGGCGGT-TCGGCGGGCGGTDesign primers
5052596GGTCCA-GGTCCA-GGTCCA-GGTCCADesign primers
5217872CCGGACCTGACCCGG-CCGGACCTGACCCGG-CCGGACCTGACCCGG-CCGGACCTGACCCGGDesign primers
5412501GAGACCGCA-GAGACCGCA-GAGACCGCADesign primers
5560185CCTTCGGCGCCCGGC-CCTTCGGCGCCCGGC-CCTTCGGCGCCCGGCDesign primers
5728791CTGTCCGC-CTGTCCGC-CTGTCCGCDesign primers
5728822CACGCCCA-CACGCCCA-CACGCCCADesign primers
5728898CCGCCTGC-CCGCCTGC-CCGCCTGC-CCGCCTGC-CCGCCTGC-CCGCCTGC-CCGCCTGCDesign primers
5797593GGCCAGACGCTGAGCC-GGCCAGACGCTGAGCC-GGCCAGACGCTGAGCC-GGCCAGACGCTGAGCCDesign primers
5816696CTGACCGGG-CTGACCGGG-CTGACCGGG-CTGACCGGGDesign primers
5816733TGACCCAGGCTGCCGGGC-TGACCCAGGCTGCCGGGC-TGACCCAGGCTGCCGGGC-TGACCCAGGCTGCCGGGCDesign primers
6087571GCTGCG-GCTGCG-GCTGCG-GCTGCGDesign primers
6462492TCCGAA-TCCGAA-TCCGAA-TCCGAADesign primers
6495163TCC-TCC-TCC-TCC-TCC-TCC-TCC-TCC-TCC-TCC-TCCDesign primers
6528529TCGCAGCCC-TCGCAGCCC-TCGCAGCCC-TCGCAGCCC-TCGCAGCCC-TCGCAGCCC-TCGCAGCCC-TCGCAGCCC-TCGCAGCCC-TCGCAGCCCDesign primers
6570030AGCCGGCGCTCGACCGGC-AGCCGGCGCTCGACCGGC-AGCCGGCGCTCGACCGGCDesign primers
6656761CCCGGCCCG-CCCGGCCCG-CCCGGCCCG-CCCGGCCCG-CCCGGCCCGDesign primers
6683113CCGGGCTGCTGCTGG-CCGGGCTGCTGCTGG-CCGGGCTGCTGCTGGDesign primers
7056481GCCGGG-GCCGGG-GCCGGG-GCCGGG-GCCGGGDesign primers
7056630AGCCGG-AGCCGG-AGCCGG-AGCCGGDesign primers
7261206CCAGCT-CCAGCT-CCAGCT-CCAGCT-CCAGCT-CCAGCT-CCAGCT-CCAGCT-CCAGCT-CCAGCT-CCAGCT-CCAGCT-CCAGCT-CCAGCT-CCAGCTDesign primers
7272313CCCAGCGATCAGTGCGGG-CCCAGCGATCAGTGCGGG-CCCAGCGATCAGTGCGGGDesign primers
7287683CGGCCA-CGGCCA-CGGCCA-CGGCCADesign primers
7287799ACCACG-ACCACG-ACCACG-ACCACG-ACCACGDesign primers
7287847ACCACG-ACCACG-ACCACG-ACCACGDesign primers
7314789CTCACACCCAGCGGAAGCTGGGC-CTCACACCCAGCGGAAGCTGGGC-CTCACACCCAGCGGAAGCTGGGC-CTCACACCCAGCGGAAGCTGGGCDesign primers
7401721CTTGCTGCCGGGCCGGGG-CTTGCTGCCGGGCCGGGG-CTTGCTGCCGGGCCGGGG-CTTGCTGCCGGGCCGGGG-CTTGCTGCCGGGCCGGGGDesign primers
7405852CGCGGCGCAACCCAG-CGCGGCGCAACCCAG-CGCGGCGCAACCCAG-CGCGGCGCAACCCAGDesign primers
7405921GCCCGGCGCG-GCCCGGCGCG-GCCCGGCGCGDesign primers
7406117CGCAGCCCGG-CGCAGCCCGG-CGCAGCCCGGDesign primers
7684580CGGCGCGCAGGTCCCAGC-CGGCGCGCAGGTCCCAGC-CGGCGCGCAGGTCCCAGC-CGGCGCGCAGGTCCCAGC-CGGCGCGCAGGTCCCAGCDesign primers
7729532CCACGGGCCACGAACCCGCGGA-CCACGGGCCACGAACCCGCGGA-CCACGGGCCACGAACCCGCGGADesign primers
7729599CACGGGC-CACGGGC-CACGGGC-CACGGGCDesign primers
7780617TCGCCACCCGGGTCC-TCGCCACCCGGGTCC-TCGCCACCCGGGTCC-TCGCCACCCGGGTCC-TCGCCACCCGGGTCCDesign primers
7887094GCCGCCGGAGAA-GCCGCCGGAGAA-GCCGCCGGAGAADesign primers
8111546CGGCGTCCGGCACGGCGAGGG-CGGCGTCCGGCACGGCGAGGG-CGGCGTCCGGCACGGCGAGGG-CGGCGTCCGGCACGGCGAGGG-CGGCGTCCGGCACGGCGAGGG-CGGCGTCCGGCACGGCGAGGG-CGGCGTCCGGCACGGCGAGGGDesign primers
8337207GAAGCCGGAGTCGGCGTC-GAAGCCGGAGTCGGCGTC-GAAGCCGGAGTCGGCGTCDesign primers
8365014GAAGCCCGCGCCACGCT-GAAGCCCGCGCCACGCT-GAAGCCCGCGCCACGCT-GAAGCCCGCGCCACGCT-GAAGCCCGCGCCACGCT-GAAGCCCGCGCCACGCT-GAAGCCCGCGCCACGCT-GAAGCCCGCGCCACGCT-GAAGCCCGCGCCACGCT-GAAGCCCGCGCCACGCTDesign primers
8365368GCAGCGGTCCAGGCCGC-GCAGCGGTCCAGGCCGC-GCAGCGGTCCAGGCCGCDesign primers
8366004GCCACGTGCAGCCCA-GCCACGTGCAGCCCA-GCCACGTGCAGCCCADesign primers
8455714GTGACCCGATCC-GTGACCCGATCC-GTGACCCGATCCDesign primers
8500693GCGGCGGGCGGCGGCTTCG-GCGGCGGGCGGCGGCTTCG-GCGGCGGGCGGCGGCTTCGDesign primers
8616956TCGCGGCA-TCGCGGCA-TCGCGGCA-TCGCGGCA-TCGCGGCA-TCGCGGCA-TCGCGGCA-TCGCGGCA-TCGCGGCA-TCGCGGCA-TCGCGGCA-TCGCGGCA-TCGCGGCADesign primers
8695997GCGGGTCCG-GCGGGTCCG-GCGGGTCCG-GCGGGTCCGDesign primers
8793860GGTCGTCGGAGGCGT-GGTCGTCGGAGGCGT-GGTCGTCGGAGGCGT-GGTCGTCGGAGGCGTDesign primers
8978049GGCCGG-GGCCGG-GGCCGG-GGCCGGDesign primers
8978074GCCAGG-GCCAGG-GCCAGG-GCCAGG-GCCAGG-GCCAGGDesign primers
8978111CCAGAGCCGGGG-CCAGAGCCGGGG-CCAGAGCCGGGG-CCAGAGCCGGGGDesign primers
9063696CCGGCGAGCCGGTCCCGG-CCGGCGAGCCGGTCCCGG-CCGGCGAGCCGGTCCCGGDesign primers
9095470GGTCTCCGCCACGCCATCCGCCC-GGTCTCCGCCACGCCATCCGCCC-GGTCTCCGCCACGCCATCCGCCCDesign primers
9162381CGGACAACCGCCTGCGGG-CGGACAACCGCCTGCGGG-CGGACAACCGCCTGCGGG-CGGACAACCGCCTGCGGGDesign primers
9162454GGACAAGCGCTGCGGGC-GGACAAGCGCTGCGGGC-GGACAAGCGCTGCGGGC-GGACAAGCGCTGCGGGC-GGACAAGCGCTGCGGGC-GGACAAGCGCTGCGGGCDesign primers
9316564GTCCTCCGGGCCTGG-GTCCTCCGGGCCTGG-GTCCTCCGGGCCTGG-GTCCTCCGGGCCTGG-GTCCTCCGGGCCTGGDesign primers
9365701GCTCCGG-GCTCCGG-GCTCCGG-GCTCCGG-GCTCCGG-GCTCCGG-GCTCCGG-GCTCCGG-GCTCCGG-GCTCCGG-GCTCCGG-GCTCCGG-GCTCCGG-GCTCCGG-GCTCCGG-GCTCCGG-GCTCCGG-GCTCCGG-GCTCCGG-GCTCCGGDesign primers

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