Microsatellites /Tandem Repeats database

Genome: Thermoanaerobacterium thermosaccharolyticum M0795

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
102873TATAT-TTTAT-GATAT-AATAT-AATATDesign primers
150414AA-TT-AT-AA-TA-AT-AT-TT-AT-AT-TT-AT-AT-TT-ATDesign primers
182632TAAAAATAATAAAAACAATAAAAATAGDesign primers
185494GGTGGTGGAGGTGGTGGCGGTGGADesign primers
289443AT-TT-GT-AA-TT-GT-AT-TT-TT-AT-CT-GTDesign primers
325353AAATGTAAAAGTTAATGTAAGTGTDesign primers
357227TAAAATTAAATTAAATAAAATACAADesign primers
370327AATTAAAAATAAAATTAGACTTAADesign primers
384613AAAATTATAACAAATAATAAGAAATTATGADesign primers
411163AAATA-AAATA-ATATA-TAATA-AAATCDesign primers
432928AG-AA-AC-TA-AA-AG-AA-AT-CA-AA-AG-AA-AG-TA-AA-AA-AA-AC-AA-AADesign primers
442935AGCAATAGCAAGAGAAATAGGAATDesign primers
676570ATTTTCACACAAGTTTCACAAAATTTTCACATTDesign primers
839657AGTATGGAAAAAGGCATGGAAAAAGGTATGGAAAAAGGTATGGAAAAAGGTATGGAAAATDesign primers
929703AGTATACAAGAATACAAGTATGCADesign primers
953511ATTTTTTTGGGTTTTTATGGATATTTTTGGDesign primers
972235GCCTCTTTCAATACCTTTTTCAATACCTTTTTCAATDesign primers
1014092ATTTTTAATTTTATCTTTATTTTCDesign primers
1020547AGATTAAGATAATATTAAGATGAGATTAATTTADesign primers
1054378ATATTAAGGAAATATTAAAAAAATATTAAAAAADesign primers
1105782AATTTTTTATTTTTTTAAATTTTTDesign primers
1137426ATTTGGTGATATTTTTGGTGATATCTTCGGTGATATDesign primers
1219963AAGATTTTCAAAGATATTAAAAGATTTAGADesign primers
1243828TAAAATAAATTTAAATAATATAAAADesign primers
1368513TAATATATTATATTATGATATAATTDesign primers
1466109AAAAAAGAAAAATAAAGACAAAAAACAAAADesign primers
1577211TATTATTATTGTTACTATTGTTATDesign primers
1615879ATAAAGTAAAATAAAGTAAAATAAGDesign primers
1635336TTTTAAGTAGTTTTAATTGGTTTTAATAAGDesign primers
1639730TAGCTCACAAGTTTTGTTTTA-TTCTTTACAAGTTTTGTTTTA-TTCTTTACAAGTTTTGTTTTA-TTCTTTACAAGTTTTGTTTTA-TTCTTTACAAGTTTTGTTTTADesign primers
1731123ATGTAAAATTTATGTTAATTTTATGTTAAATTTDesign primers
1754847TAACCACTTTGCACCACTTTAAACCACTTADesign primers
2078599TTAAGTCCAGTAAGTCCACTAAGTCCADesign primers
2087653TTCTATTTCTTCAACTTCATCTTCTTCAACTTCATCTTCTTCAACDesign primers
2160667ATTATAAAATTATTAAATTATTAADesign primers
2238865TA-AT-TT-TC-TG-AT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TDesign primers
2318694TGCACCTTTCTCTATACCTTTCTCTATACCTTTCTCDesign primers
2368563TTATATTATTTTAAATTATTTTTTADesign primers
2378113ATTTT-ATTTT-ATTAT-ATTTA-ATTTADesign primers
2393234CAAAATCAGCAAAAACAGCAAAATCAGDesign primers
2456317TATTTATTTTTATTTCTTCTTTTTTATTTGDesign primers
2523003GTCCGACTGGTCCAACTGGTCCTACTGDesign primers
2523031TCCTACCGGTCCTACTGGTCCGACCGGTCCTACTGGTCCGACCGGTCCTACTGGTCCGACCGGTCCTACCGGTCCTACTGGTCCTACCGGTCCTACTGGDesign primers
2523140CCTACCGGTCCTACTGGTCCGACCGGTDesign primers
2589347TTATCTTTATATTTATCCTTATATDesign primers
2601038ATACCTTTCTCTATGCCTTTTTCTATGCCTTTCTCADesign primers
2616218GTACATAAT-GTACATAAT-ATACATAATDesign primers
2693830CTTTCGACATTGTCTAATCTC-TTTTCAACATTATCTAATCTC-TTTTCAACGCTGTCTAATCTC-TTTTCAACGCTGTCTAATCTC-TTTTCGACACTGTCTAATCTC-TTTTCGACATTGTCTAATCTCDesign primers
2772769TTTAATGTAATCTAAGTTAATGTAADesign primers

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