Microsatellites /Tandem Repeats database

Genome: Geobacillus thermoleovorans CCB_US3_UF5

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
274263AAAGATATA-AAAGATATA-AAAAATATADesign primers
343396GAACAAACGAACAAAAAAACAAACDesign primers
347509TGCTCTTTTCGAATCTCTTGTTGTTCTTTTCGGATTTCTTGTTGTTCTCTCCGAATTTCTTGTTGTTCTTTTCGGATTTCTTCTDesign primers
394616CAGGGGATAAAGCAAGGGATGAAGCAAGGGATGAAGDesign primers
415123TTGCTTTTTCCATTCCTTTCTCCATTCCTTTCTCCADesign primers
510631AA-AA-AA-AT-AA-AA-AA-TA-AA-AA-AC-AA-ADesign primers
992473GTTATGTCATGTTTTATTATGGTATDesign primers
1217254TATGATAAAATAGGAAAAAAAGTGATAAAADesign primers
1526877CGCATTTCCTGTTGTTCTCTTCGGATCTCCTGCTGTTCTTTTCGCATTTCCTGTTGTTCTCTTCGGATTTCCTGTTGCTCTTTCCGCATTTCCTGTTGTTCTCTTCGGATTTCCTGTTGCTCTTTCCGCATTTCCTGTTGTTCTCTTCGGATTTCCTGCTGTTCTTTCCGCATTTCCTGTTGTTCTCTTCGGATTTCCTGCTGTTCTTTCCGCATTTCCTGTTGTTCTCTTCGGATTTCCTGTTGCTCTTTCCGTATTTCTTGTTGTTCTCTTCGGATCTCCTGCTGTTCTTTTCGCATTTCTTGTTGTTCTGCTDesign primers
1751695GAAGGGGAAGTGGAAGGGGAATGGDesign primers
1800154TGTGCTTTTTTGCTTTTATGCTTTDesign primers
1928078ATG-ATG-GTG-ATG-ATG-ATG-GTG-ATGDesign primers
2064016GTTGTTTCATTC-CTTGCTTCATTC-CTTGCTTCATTC-CTTGTTTCATTCDesign primers
2080930ATTTTTGTAGATTTCCGTAGATTTTCGTAGDesign primers
2187408GGACCCACAGGACCTCAAGGACCCACAGGGCCTACAGGACCGACTGGACCTCAADesign primers
2187486CAAGGACCCACAGGACCTCAAGGACCTACAGGGCCGACCGGACCCACAGGACCTCAAGGACCTACAGGGCCGACTGGACCCACAGGACCTCAAGGACCCACAGGGCCGDesign primers
2323290AAAAAAGGAAAAAACGAAAAAAAGDesign primers
2377781AATATATTATAT-AATATATTATAT-CAGATATTATATDesign primers
2504049GAAGCCGGACAACAGCGCCTC-GAAGAACGGCAACAGCGCCTC-GAAGAACGGCAACAGCGCCTC-GAAGAACGGCAACAGCGCCTCDesign primers
2609381CGCCGCCACCGCCACCGCCGCTGCDesign primers
2799014TTATATGTAATGATATCTAATTATAAATAADesign primers
2804340CCAACATGTCCTTTTTCATGG-CATCCATGTCTTTTTTCATGG-CATCCATGTCTTTTTTCATGG-CGTCCATGTCTTTTTTCATGGDesign primers
2853925ACATAAATATACTTAAACATAAATAAATATDesign primers
2862254TAAAATTA-CGTAATTA-CGTAATTA-CGTAATTA-CGTAATTA-CGTAATTADesign primers
2999255ATCGAAGCGAGAGCGGGCAGCATCGAAGAGAGAGTGAACAGCATCGAGGCGAGAGTAGACAGCDesign primers
3063974GAAAAT-GAGAAT-GAGAAT-TAAAATDesign primers
3141210AAAAAAAAAAAAAAAATAAAAAAACAACAADesign primers
3322480TTGCCTTTTTCGATTCCTTTTTCGATTCCTTTTTCGDesign primers
3495338ACTCATCGTATTCATCGTATTCATCGTDesign primers

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