Microsatellites /Tandem Repeats database

Genome: Mycobacterium sp. Spyr1

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
246607GGTGCC-GGTGCC-GGTGCC-GGTGCCDesign primers
299020CGGCGGTGTGGGAGA-CGGCGGTGTGGGAGA-CGGCGGAGTGGGAGADesign primers
520418GTCGTCGTG-GTCGTCGTG-GTCGTCGTGDesign primers
529104CGACGC-CCACGC-CCACGC-CCACGC-CCACGC-CCACGCDesign primers
572027AGGCTAACCA-CGGCTAACCA-CGGCTAACCADesign primers
1247264GAGTCGTCG-GAGTCGTCG-GAGTCGTCGDesign primers
1297302CAGCAGCATGGC-CAGCAGCATGGC-CAGCAGCACGGCDesign primers
1342417CCCGGCGGCGGGCCGCCGATCAGA-CCGAGCGGCGGGCCGCCGATCAGA-CCGAGCGGCGGGCCGCCGATCAGA-CCGAGCGGCGGGCCGCCGATCAGADesign primers
1345586GCCGACGAC-GCCGACGAC-GCCGACGACDesign primers
1462691CGAAACCCGTCGA-CGAAACCCGTCGA-CGAAACCCGTTGADesign primers
1465299CACGGCGTCAACCGACACGGCGTCAGCCGACACGACGTCAACCGADesign primers
1661387CTGTGCGCCGTAACCCTGTGGGCCGTAACCCTGTGCGCCGTAACCCTGTGCGCCGTAGCCDesign primers
1725790GCCTCCGCCGCCGGGCATGGGGATGCCTCCGCCGCCAGGCGTGGGGATGCCTCCGCCGCCAGGCGTGGGGATDesign primers
1764566CAACCGTGGCAACGA-CAACCGTGGCAACGA-CAACCGCGGCAACGADesign primers
2120278CGACGACTCCGAGGA-CGACGACTCCGAGGA-CGACGACTCCGAAGA-CGACGACTCTGAGGADesign primers
2199530CCCCGT-CCCCGT-CCCCGT-CCCCGTDesign primers
2255650CAGAAGACGCCGCCTCGGAAGACGCCGCCTCGGAAGACGCCGCCTDesign primers
2262751GTCTGA-GTCCGA-GTCCGA-GTCCGA-GTCCGA-GTCCGADesign primers
2344768TCGGGCTCGGGTTCAGGCTCGGGTTCGGGCTCGGGTTCGGGCTCCGGTDesign primers
2392277GC-CC-CC-GC-AC-CC-GC-AC-CC-GC-AC-CC-GC-AC-CC-GC-AC-CCDesign primers
2527115TTCGCGGCTCAGCCGCTTCTGCTGTTTCGCGGCTCAGCCGCTCCTGTTGTTTCGCGGCTCAGCCGCTTCTGCTGTDesign primers
2554488CGCCTGGTTGACGACGT-CGCCTAGTTGACGACGT-CGCCTAGTTGACGACGT-CGCCTAGTTGACGACGTDesign primers
2685786TTCGGTGTAGTTGGCCTTCGGTGTAGTTGGTCTTCGGTGTAGTTGGTCDesign primers
2778435GACCTCGGGGCC-GACCTCGGGGCC-GACCTCGGGGACDesign primers
2778491CGATGTCGAGGTCGATGTCGATGTCGATGTTGAGGTCGATGTTGAGGTDesign primers
2862522GCCGACCGT-GCCGACCGT-GCCGACCGTDesign primers
3239340GCGGAGCTT-GCGGAGCTT-GCGGAGCTTDesign primers
3449230TGACACCGAGCCGGAGGCGAGCATCGAGACCGAGCCGGAGGCGAGCATCGAGACCGAGCCGGAGGCGAGCATDesign primers
3673729TCAAAAAGAACGCCTCGTTGAAAAAGAACGCCTCGTTGAAAAAGAACGCCTCGTDesign primers
3858008AGCGTCGAACCAG-ACCGTCGAACCAG-ACCGTCGAACCAG-ACCGTCGAACCAGDesign primers
3931538CAGCGG-CAGCGG-CAGCGG-CAGCGGDesign primers
4002525CGGGAACACGACCGCGAACACGACCGCGAACACGACDesign primers
4389213CGTCGC-CGTCGC-CGTCGC-CGTCGCDesign primers
4498108CACGAC-CACGAC-CACGAC-CACGAC-CACGACDesign primers
4506694CGGAGCACACCGAAACCACCGAGCACACCGAAACCACCGAGCACACCGAAACCADesign primers
4663163CCGGCCTCG-CCGGCCTCG-CCGGCCTCGDesign primers
4664701GGCCGCACC-GGCCGCACC-GGCCGCACCDesign primers
4777971CATCGG-CATCGG-CATCGG-CATCGGDesign primers
4778016CGTCGGAGATGTCGCCGTTGGAGATGTCGCCGTCGGAGATGTCGTDesign primers
4797484TCGACGGCGGTGTCCTCGACGACGGTGTCCTCGACGACGGTGTCCDesign primers
4997250AGCCGCTCC-AGCCGCTCC-AGCCGCTCCDesign primers
5183237CGCCGACGG-CGCCGACGG-CGCCGACGGDesign primers
5220524CCACGCCCGGTCTGACCACGCCCGGCCTGACCACACCCGGTCTGADesign primers
5220640CTGACCACTCCCGGCCTGACCACTCCCGGTCTGACCACGCCCGGCDesign primers
5305953CGCTGTTTGTTGGTTCA-CGCTGTTTGTTGGTTCA-CGCCGTTTGTTGGTTCA-CGCCGTTTGTTGGTTCADesign primers
5373341GGGCGGGCGCGGGCCGAGCGGGCGCGGGCCGAGCGGGCGCGGGCCDesign primers
5507745TCGGTG-TCGGTG-TCGGTG-TCGGTGDesign primers

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