Microsatellites /Tandem Repeats database

Genome: Halothermothrix orenii H 168

Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
68142TAATAAAGTGATAAAGTATTAAAGDesign primers
154947ATTAT-ATTAT-ATAAT-GTTAT-TTTATDesign primers
248062TAGTTATATAAAAAGTTATAAAAAAAGTTATATAAADesign primers
253131ATTAT-ATTAT-ATAAT-GTTAT-TTTATDesign primers
309760TGATATTCTTAGATATTCTCAGATATCCTTDesign primers
359123AAACCATATTAACCATATAAAACATATDesign primers
363175AAGGAAATGGAAAAGGCAGAGGAADesign primers
363432TAATAAATC-GAATAAATC-GAATAAATCDesign primers
388116TAAAATATAATATAGAAAATATATAATADesign primers
394909TATCTAATAATAATTAATAATATCAAATAADesign primers
412070ATATTAT-ATATTAT-ATCTTAT-ATATTATDesign primers
416525TCCCTGTCACTGGCCCTGTCCCTGDesign primers
425099ATATTATTTAAAATTATTTAAAATTTTTTADesign primers
440125TTTAAATTTAGATTTAAATTTTAADesign primers
505056TTTAATTTGAATTAATTAAATATAADesign primers
580355TTTTTATTATTATTTTAAATTTTADesign primers
642695ACCATATGTTACTTTATGTTACTTTATGTTDesign primers
661840AAAAGAAAAAGTTAAAGAAGAAGADesign primers
745756AAATTAAAATTTAAATAAATATTADesign primers
753977TAATTAAAAAATTAAATAATTAACDesign primers
826974TATTTTATCTTTTTTTATTCTATTADesign primers
850286AA-AA-AA-AA-GA-AT-AA-AA-AT-AA-AA-AT-ADesign primers
868176TTTATTTGATATTATTTTATATTATDesign primers
903092AAGATATATTAAGATATATATAGATAAATTDesign primers
950830CAATACTCTCAAATAGTCTCACATACTCTCDesign primers
971943ATATAGTGGTAGATAGTGGGGTATTGTGGTDesign primers
982576TCTCTGTTCATCTCTTTTCTTCTTTGTTAADesign primers
987470GAAAAAGGATGGAAAAGGCTGAAAAAGGGADesign primers
1029830AAAATAAAAAATTAAAAAAATTAADesign primers
1030319TTAAAAAAATTAAAAATATTAAAAAACDesign primers
1105832TTTTTTTTCTGTTTTATTTTTTCTTDesign primers
1213921AATAATAATATAATAAAATAATAADesign primers
1267540TATTTATAAAACTGTTTATAAAAATATCTAAAAAACDesign primers
1321572AAGATAATAAGAGAATAATATAATDesign primers
1438013TTTCTTTTCTATTTTTTTCTTTTCTTCTTTDesign primers
1485915TTAAAACTTTATAAAACTTATTAATATTTTDesign primers
1528193CCTTTTTATATTCCTTTTTGTATTCATTTATATATTDesign primers
1539638TTTTTATATTA-AGTTTATATTA-AGTTTATATTADesign primers
1551736AATAAA-AATAAA-AATTAA-TATAAADesign primers
1576123AGTAGTTGTAAAGTAGTTGTTTTAAAGTAGTTGTTGTAAAGCDesign primers
1649101CCCCTTTTCTAAAGAATCACTATATCCTTTTTTAAAGAATCTCTATATCCTTTTTTAAAGAATCACTATDesign primers
1655978CTTATTTATTAATAATTTACATATTAATAATTTACATATTAATAADesign primers
1702564TTTATAAATCACATATCAATAATTTAAATCACATATCATTAATATAAATTACATATCAATDesign primers
1727130GTGTTAGATGTTAAATGCTAGATGTTAAATGTTAGATGTTAADesign primers
1738571CCTCATAACTTATAGTCTTCTAACTTATAGTCTTGTAACTTATAGDesign primers
1849016AGGTGACCGAGGTCACCGAGGTGACAGDesign primers
1874388TAAAACTATTAAAATTATTAAAACTTTDesign primers
1919386ACAAGATCTTACAGTAAAATCTCTTACAGTAAAATCTCTTACAGTDesign primers
2056428AATAA-ATTAA-AATAA-AATAT-ATTAADesign primers
2135317TTTTTTTTAATTTTTTCTATTTTTTTTACADesign primers
2163199ACGATAAAAAGAAAAAAAATAACAAGAAAAACCAGAAAAATAAAADesign primers
2246414TTTTTTGTTTTTTTCTTTTTTTTTADesign primers
2285050TTTATTTTTTTATATTTTATTTTTTDesign primers
2417200ATATGAGATTATATAAGGTTATATGAAAGTDesign primers
2458523GTTAATTTAGTAAATATTAATTTGGTAAATATCAATTTAGTAAGTATAAATTTAGTAAATATCAATTTAGTAAATDesign primers
2470076TTATATTTTAATATTTTTACATTTDesign primers
2477245TGATATTCATGATATTCCTGATATTTADesign primers
2504904TTTAAAATTAAATTTTAATTTAAATTTATADesign primers
2518245GTTACATTTCTTTATCTCCCATTTGACCATATTACTTTATCTCCCATTTGACTATATTACTTTATCTCTCATTTGDesign primers
2520544TTTCCTTATATATACTTATATAACCTTATADesign primers
2536842AGTAATACTCCTTCCGATCATACTCCTTCCAGTCATACTCCTCCCDesign primers

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