Microsatellites /Tandem Repeats database

Genome: Yersinia pseudotuberculosis PB1/+

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
96676TCATCCC-TCATCCC-TCATCCC-TCATCCC-TCATCCC-TCATCCCDesign primers
117478TGGTGGTT-TGGTGGTT-TGGTGGTT-TGGTGGTT-TGGTGGTT-TGGTGGTT-TGGTGGTT-TGGTGGTTDesign primers
209415TCACT-TCACT-TCACT-TCACT-TCACT-TCACT-TCACTDesign primers
211994CAGACCGA-CAGACCGA-CAGACCGA-CAGACCGADesign primers
258395GAAGTTGAA-GAAGTTGAA-GAAGTTGAA-GAAGTTGAA-GAAGTTGAA-GAAGTTGAA-GAAGTTGAA-GAAGTTGAA-GAAGTTGAADesign primers
270190ACGATTA-ACGATTA-ACGATTA-ACGATTA-ACGATTA-ACGATTA-ACGATTA-ACGATTA-ACGATTADesign primers
429849TTATAG-TTATAG-TTATAG-TTATAG-TTATAG-TTATAG-TTATAGDesign primers
434114CTCTGGTGT-CTCTGGTGT-CTCTGGTGTDesign primers
437891TGCTTTT-TGCTTTT-TGCTTTT-TGCTTTT-TGCTTTT-TGCTTTT-TGCTTTT-TGCTTTT-TGCTTTT-TGCTTTTDesign primers
546065TGACGGTGG-TGACGGTGG-TGACGGTGGDesign primers
825334CTGCTCAA-CTGCTCAA-CTGCTCAA-CTGCTCAA-CTGCTCAA-CTGCTCAA-CTGCTCAADesign primers
883946TGCTGTAGA-TGCTGTAGA-TGCTGTAGADesign primers
913648ACTCCCTG-ACTCCCTG-ACTCCCTG-ACTCCCTG-ACTCCCTG-ACTCCCTGDesign primers
916566AATCATACAAAGTTATCTA-AATCATACAAAGTTATCTA-AATCATACAAAGTTATCTA-AATCATACAAAGTTATCTA-AATCATACAAAGTTATCTADesign primers
1014508TGCAGGTTAA-TGCAGGTTAA-TGCAGGTTAADesign primers
1080195GTAATGTGT-GTAATGTGT-GTAATGTGTDesign primers
1144613GCTATGCC-GCTATGCC-GCTATGCC-GCTATGCC-GCTATGCCDesign primers
1187308AATTTAAT-AATTTAAT-AATTTAAT-AATTTAAT-AATTTAAT-AATTTAATDesign primers
1187358TTAAAAG-TTAAAAG-TTAAAAG-TTAAAAG-TTAAAAG-TTAAAAG-TTAAAAG-TTAAAAG-TTAAAAG-TTAAAAG-TTAAAAG-TTAAAAG-TTAAAAGDesign primers
1349911ATAGTAATATATGTTTA-ATAGTAATATATGTTTA-ATAGTAATATATGTTTA-ATAGTAATATATGTTTADesign primers
1410510GTTAATCTACCCGAGTATG-GTTAATCTACCCGAGTATG-GTTAATCTACCCGAGTATGDesign primers
1447184TGGAAG-TGGAAG-TGGAAG-TGGAAGDesign primers
1461454GTTAATA-GTTAATA-GTTAATA-GTTAATA-GTTAATA-GTTAATA-GTTAATA-GTTAATA-GTTAATA-GTTAATA-GTTAATA-GTTAATADesign primers
1470028TGAGCAA-TGAGCAA-TGAGCAA-TGAGCAA-TGAGCAA-TGAGCAA-TGAGCAA-TGAGCAA-TGAGCAA-TGAGCAA-TGAGCAA-TGAGCAA-TGAGCAA-TGAGCAA-TGAGCAA-TGAGCAA-TGAGCAA-TGAGCAADesign primers
1470155GAACAAT-GAACAAT-GAACAAT-GAACAAT-GAACAAT-GAACAAT-GAACAAT-GAACAAT-GAACAATDesign primers
1548725TTGTAATGAGATTGT-TTGTAATGAGATTGT-TTGTAATGAGATTGT-TTGTAATGAGATTGTDesign primers
1569226AATAGGCTTGTATTGATA-AATAGGCTTGTATTGATA-AATAGGCTTGTATTGATADesign primers
1576909AGAGCAAA-AGAGCAAA-AGAGCAAADesign primers
1598263AGTTGGATTGAAGTAAAAAT-AGTTGGATTGAAGTAAAAAT-AGTTGGATTGAAGTAAAAAT-AGTTGGATTGAAGTAAAAATDesign primers
1675799ATTGGTTA-ATTGGTTA-ATTGGTTA-ATTGGTTA-ATTGGTTADesign primers
1696339CCATAAACATGCGT-CCATAAACATGCGT-CCATAAACATGCGTDesign primers
1701965ATTTCCTGT-ATTTCCTGT-ATTTCCTGT-ATTTCCTGT-ATTTCCTGT-ATTTCCTGT-ATTTCCTGT-ATTTCCTGT-ATTTCCTGT-ATTTCCTGT-ATTTCCTGTDesign primers
1728305GGATAGTCG-GGATAGTCG-GGATAGTCG-GGATAGTCG-GGATAGTCGDesign primers
1840737TATTTTCTAGTTATCCAAG-TATTTTCTAGTTATCCAAG-TATTTTCTAGTTATCCAAGDesign primers
2062765AATTACCCTGGCACAC-AATTACCCTGGCACAC-AATTACCCTGGCACACDesign primers
2138401CCTGATGTG-CCTGATGTG-CCTGATGTG-CCTGATGTG-CCTGATGTG-CCTGATGTG-CCTGATGTG-CCTGATGTG-CCTGATGTG-CCTGATGTG-CCTGATGTG-CCTGATGTG-CCTGATGTG-CCTGATGTG-CCTGATGTG-CCTGATGTG-CCTGATGTG-CCTGATGTGDesign primers
2222505ATCAAC-ATCAAC-ATCAAC-ATCAAC-ATCAAC-ATCAACDesign primers
2240889GTGTAG-GTGTAG-GTGTAG-GTGTAGDesign primers
2296993AATTCAT-AATTCAT-AATTCAT-AATTCAT-AATTCAT-AATTCAT-AATTCATDesign primers
2302943ACTAATCA-ACTAATCA-ACTAATCA-ACTAATCA-ACTAATCADesign primers
2318150TTTACCAAAACATTAGG-TTTACCAAAACATTAGG-TTTACCAAAACATTAGGDesign primers
2380067GATTGTAGTGTGATG-GATTGTAGTGTGATG-GATTGTAGTGTGATG-GATTGTAGTGTGATGDesign primers
2397700GGTGACA-GGTGACA-GGTGACA-GGTGACA-GGTGACA-GGTGACA-GGTGACA-GGTGACA-GGTGACA-GGTGACA-GGTGACA-GGTGACA-GGTGACA-GGTGACA-GGTGACA-GGTGACA-GGTGACA-GGTGACA-GGTGACA-GGTGACA-GGTGACA-GGTGACA-GGTGACA-GGTGACA-GGTGACA-GGTGACA-GGTGACA-GGTGACA-GGTGACA-GGTGACA-GGTGACA-GGTGACA-GGTGACA-GGTGACA-GGTGACA-GGTGACA-GGTGACA-GGTGACADesign primers
2408972GCGGATA-GCGGATA-GCGGATA-GCGGATA-GCGGATADesign primers
2455253TAACGAC-TAACGAC-TAACGAC-TAACGAC-TAACGAC-TAACGACDesign primers
2534653TATCACC-TATCACC-TATCACC-TATCACC-TATCACC-TATCACC-TATCACC-TATCACC-TATCACC-TATCACC-TATCACC-TATCACC-TATCACC-TATCACC-TATCACC-TATCACC-TATCACC-TATCACC-TATCACC-TATCACCDesign primers
2562423CAGCAC-CAGCAC-CAGCAC-CAGCAC-CAGCAC-CAGCAC-CAGCAC-CAGCAC-CAGCAC-CAGCAC-CAGCACDesign primers
2601812CCAAAG-CCAAAG-CCAAAG-CCAAAGDesign primers
2654960TTGTTATGAACCAATTAA-TTGTTATGAACCAATTAA-TTGTTATGAACCAATTAADesign primers
2655015TGTTATGAACCAATTAAG-TGTTATGAACCAATTAAG-TGTTATGAACCAATTAAGDesign primers
2673871AACGCTCTTTATTGCTAA-AACGCTCTTTATTGCTAA-AACGCTCTTTATTGCTAADesign primers
2715733ATTAATCATAAACAAGC-ATTAATCATAAACAAGC-ATTAATCATAAACAAGC-ATTAATCATAAACAAGCDesign primers
2736843GGTGTTGTTATGGCG-GGTGTTGTTATGGCG-GGTGTTGTTATGGCGDesign primers
2810524AGCAAGTA-AGCAAGTA-AGCAAGTA-AGCAAGTA-AGCAAGTA-AGCAAGTADesign primers
2841947GATAACACCAACCGT-GATAACACCAACCGT-GATAACACCAACCGTDesign primers
2855836GTGTTCT-GTGTTCT-GTGTTCT-GTGTTCT-GTGTTCT-GTGTTCT-GTGTTCT-GTGTTCTDesign primers
2962622ACAGATG-ACAGATG-ACAGATG-ACAGATG-ACAGATG-ACAGATG-ACAGATGDesign primers
2981217GCA-GCA-GCA-GCA-GCA-GCA-GCA-GCA-GCA-GCA-GCA-GCA-GCA-GCA-GCA-GCADesign primers
2988602AGAAATAG-AGAAATAG-AGAAATAG-AGAAATAG-AGAAATAGDesign primers
3004190CAATGAGGG-CAATGAGGG-CAATGAGGG-CAATGAGGG-CAATGAGGGDesign primers
3030503GTCAATAA-GTCAATAA-GTCAATAA-GTCAATAADesign primers
3031653CACAAAACAGGTCAA-CACAAAACAGGTCAA-CACAAAACAGGTCAADesign primers
3053694GTTTCCGGCGGTGCCGTT-GTTTCCGGCGGTGCCGTT-GTTTCCGGCGGTGCCGTTDesign primers
3053749TCTCTGGCGGTGCCGTTG-TCTCTGGCGGTGCCGTTG-TCTCTGGCGGTGCCGTTGDesign primers
3053823TCTGGCGGTGCCGTTGTT-TCTGGCGGTGCCGTTGTT-TCTGGCGGTGCCGTTGTT-TCTGGCGGTGCCGTTGTTDesign primers
3053982GTTTCCGGCGGTGCCGTT-GTTTCCGGCGGTGCCGTT-GTTTCCGGCGGTGCCGTTDesign primers
3129063CACTCACTACACCTTATT-CACTCACTACACCTTATT-CACTCACTACACCTTATT-CACTCACTACACCTTATTDesign primers
3239977TGAAGTT-TGAAGTT-TGAAGTT-TGAAGTT-TGAAGTT-TGAAGTTDesign primers
3267251AGTGACGC-AGTGACGC-AGTGACGC-AGTGACGC-AGTGACGC-AGTGACGC-AGTGACGC-AGTGACGC-AGTGACGCDesign primers
3315776GTTGGTTTGGTGTCT-GTTGGTTTGGTGTCT-GTTGGTTTGGTGTCTDesign primers
3359426CCACAG-CCACAG-CCACAG-CCACAG-CCACAG-CCACAGDesign primers
3367975GAAGGCAGA-GAAGGCAGA-GAAGGCAGA-GAAGGCAGADesign primers
3396927TAGGTTG-TAGGTTG-TAGGTTG-TAGGTTG-TAGGTTG-TAGGTTG-TAGGTTG-TAGGTTG-TAGGTTG-TAGGTTG-TAGGTTGDesign primers
3397005AGGTGGT-AGGTGGT-AGGTGGT-AGGTGGT-AGGTGGT-AGGTGGT-AGGTGGTDesign primers
3712415AAATAGTGGTTAATAGGC-AAATAGTGGTTAATAGGC-AAATAGTGGTTAATAGGCDesign primers
3730871AAAATGATTG-AAAATGATTG-AAAATGATTG-AAAATGATTG-AAAATGATTGDesign primers
3731325TCACTTTCC-TCACTTTCC-TCACTTTCC-TCACTTTCCDesign primers
3764844TTACGACAATATCCGT-TTACGACAATATCCGT-TTACGACAATATCCGTDesign primers
3773136CCGTAGTT-CCGTAGTT-CCGTAGTT-CCGTAGTTDesign primers
3797368GTTCAAATCGG-GTTCAAATCGG-GTTCAAATCGG-GTTCAAATCGGDesign primers
3814520CTCAACACTGTCAATACG-CTCAACACTGTCAATACG-CTCAACACTGTCAATACGDesign primers
3858100GTGCTCGGTTC-GTGCTCGGTTC-GTGCTCGGTTC-GTGCTCGGTTC-GTGCTCGGTTCDesign primers
3859870TAAAAG-TAAAAG-TAAAAG-TAAAAG-TAAAAG-TAAAAG-TAAAAGDesign primers
3859913AAAGGT-AAAGGT-AAAGGT-AAAGGT-AAAGGT-AAAGGT-AAAGGT-AAAGGT-AAAGGTDesign primers
3861245CGGATGA-CGGATGA-CGGATGA-CGGATGA-CGGATGADesign primers
3900291AAACGCTAT-AAACGCTAT-AAACGCTAT-AAACGCTAT-AAACGCTAT-AAACGCTAT-AAACGCTAT-AAACGCTAT-AAACGCTAT-AAACGCTATDesign primers
3910161ACATCTCC-ACATCTCC-ACATCTCC-ACATCTCC-ACATCTCC-ACATCTCC-ACATCTCC-ACATCTCC-ACATCTCCDesign primers
4075851CTGAGCAAA-CTGAGCAAA-CTGAGCAAA-CTGAGCAAA-CTGAGCAAA-CTGAGCAAA-CTGAGCAAADesign primers
4145993GATGCAGA-GATGCAGA-GATGCAGADesign primers
4146037GGTAATAAAG-GGTAATAAAG-GGTAATAAAG-GGTAATAAAGDesign primers
4223646ACCATTACAAACATCC-ACCATTACAAACATCC-ACCATTACAAACATCCDesign primers
4419369TCAAAA-TCAAAA-TCAAAA-TCAAAADesign primers
4515352GTCTCT-GTCTCT-GTCTCT-GTCTCT-GTCTCT-GTCTCTDesign primers
4546051GAAAAACAG-GAAAAACAG-GAAAAACAG-GAAAAACAGDesign primers
4548177ACCAATTAACC-ACCAATTAACC-ACCAATTAACCDesign primers
4567951CAGCTTATT-CAGCTTATT-CAGCTTATT-CAGCTTATT-CAGCTTATT-CAGCTTATT-CAGCTTATT-CAGCTTATTDesign primers
4617817ATCGGTGTCGCTTGTGATA-ATCGGTGTCGCTTGTGATA-ATCGGTGTCGCTTGTGATADesign primers

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