Microsatellites /Tandem Repeats database

Genome: Thermosipho melanesiensis BI429

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
100833AAAGGAAATGGAAAAGGAAAAGTADesign primers
143149CACATTTTTTCAAATTCTTTTACCTTTTTTDesign primers
183839CAA-TAA-TAA-TAA-TAA-TAA-TAA-TAA-TAA-TAADesign primers
192384TCAAAATTCTTCAAAAATTTTGAAAAATCTDesign primers
201601AGAAATAAAAATAGTAATAGAAGTDesign primers
203167AAAAGAAAAGGAAATAGAAAAAAADesign primers
221768AA-TA-AA-AA-GA-TA-AA-AA-AA-GA-AA-AADesign primers
271579AGATTGGAAAATATTTGAAAGGAGTGGAAADesign primers
388110GATGGAGGTGATGGTGGTAATGGAGGTDesign primers
507944AGA-AGA-AGT-AGA-AGA-AGA-AGA-AGADesign primers
597973AAACAAAAACACAAAAAACAACAADesign primers
653740CAATAAAAGAAACAATAATAAAGGAAATAATAACAGAAGAAACAADesign primers
803842TATAGCTTC-TATAGCTTC-TATATCTTCDesign primers
900603TAAATTTTTTCAATTTTTTTTGGATTTTTTDesign primers
942263TTTTCCTTTCTTTTTTTTTCTTTTTDesign primers
968624CATCAACATCACCAACAACATAAADesign primers
1091994TTTCTAATTTTTATAATTTTTCTTATTDesign primers
1109874AAATAGTTTTTAATGGTTTTAAATTATTTTDesign primers
1110323ATTTTAGAGAATTTTAGAGCATTTTATGGADesign primers
1116634GAAAATGAAAAAGAGAATGAAAAADesign primers
1120895AGAAAAAAGAAGAAATAAAAAAGTAAAADesign primers
1130214TATTTTTTTCTTTTTTTACTTTTTDesign primers
1137037TATTGAAAGAATATTAAAAGAATATTCAAAAAADesign primers
1173271TT-GT-TT-TT-TT-GG-TT-TT-TT-GT-TT-TTDesign primers
1219526TGGAAGAGGATATGGTTATGGCAGAGGATATGGATATGGTAGAGGTTTTGGTTADesign primers
1220385ATGATTTTTCATGATTTTCCATTCTTTTTCDesign primers
1316319TTTTT-TTATT-TTGTT-CTTTT-CTTTT-TTCTTDesign primers
1323529TTTTTTTTCTTGTTTTTCTTGTTTTTTTTCDesign primers
1350175TTAATTTTTTCATTTTTAAATTTTDesign primers
1463440CACTACGGTTTTCACTTCGATTTTCACTTCGGTTTTCACTACTGTTTCDesign primers
1581289TAGAAAAATTGAGAAAAATGTATAAAGATTDesign primers
1613418TGAAAA-AGAAAA-AGAAAA-TGAAAADesign primers
1618186AAAATTTTCTGAAAAATTATTTGAAAAATTTTTGGADesign primers
1624695TTAAAAAAGTTAAAAAACTTCAAAAAGDesign primers
1627763TCTTTTTTTGTCTTTTCTTTTCTTGATTTGDesign primers
1655776TGGCTATGGCTTTGGGTATAGCTADesign primers
1672570AAAAATGAAAATAAAAACAAAATTAAAAAGDesign primers
1698199ATAATAATTACTTATAATTAAAAATATTTADesign primers
1698254TTGTTATTATGTTATTATTTTGTTGTGATTATTDesign primers
1814009GTTTTAAGAAATATTAAGAAATGTTAAGAADesign primers
1840706AAAAAGAAAATGTAAAAGAAAATGDesign primers
1854226TATATTACATAATATTATACAATATDesign primers
1865976TGAAAAAATTTGAAGAAATGGTAAAAAATTDesign primers
1911402TTTTTCAAGATTTTTTTAGATTCTTCAAGADesign primers

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