Microsatellites /Tandem Repeats database

Genome: Borrelia burgdorferi

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
3647AAATAACAATAAAAATATTAATAADesign primers
38027AAAAAAAAAGAATAAAAACAAAAATDesign primers
142864ACTAAAACTAAGAATAAAACTAAAADesign primers
160312TTAAAAAAATTGATAAAAATATAAAAATATTDesign primers
170722TC-TT-TT-GT-TC-TT-TT-TT-TC-TT-TT-TT-TDesign primers
210932AA-AA-AA-AT-AA-TA-AA-AA-TA-CA-AA-AA-AT-AA-ADesign primers
211342ATTTTATTTTTAATTTTAATATTAADesign primers
238608AAATAAATAAAAAAATAAATATATDesign primers
257166AGTTGAAATTGAATTTGAAATTGAAGDesign primers
272585AAAAATAAAAAAAGAAAAAGAAAATDesign primers
273698TAATTATAGTTATCATTATTATTATAACTATAATDesign primers
275079AAAAA-TAAAA-GAAAA-TAAAA-TAAAADesign primers
286050CATTAACCTTAACATTAGCATAAADesign primers
340164AAATAAAAAATTAAAAACAAAAAATACADesign primers
344027AA-AA-AA-GA-AA-AA-AT-AA-AA-AT-AT-AA-AADesign primers
363341GCAACATAAGCAATATAAGCAAAATAADesign primers
396467AAA-TAA-AAA-AAT-TAA-AAA-ATA-ATA-AADesign primers
421712GGAATTGGGATTGGAGTTGGATTTDesign primers
425228ATAAAATTAAAAATGAAATTAAAAATDesign primers
431795AAATAATAAAATAAAAAAATAATTDesign primers
587054AATTT-ATTTT-ATTTT-GATTT-TATTT-ADesign primers
590953TTTAA-ATTAA-ATTAA-ATTAA-ATTAADesign primers
623502TTTTTTTATTTTTATTTGTTTTTTCTDesign primers
652004CTTTTATTTCTTTTATTGCTCTTATTTDesign primers
718858ATTTTTATTATTGTTTTTAATTTTDesign primers
741599TTTTTTTCTTTTTATGTTTTTTATTDesign primers
756845AT-TT-TT-AT-AT-TT-AT-TT-CT-TT-TT-TTDesign primers
769541TTGTTTTAAAATTTTTTTAGAATTTTTTTAGAATDesign primers
771811TTTCATCTTCATTTTTATTTTCTTDesign primers
771887ATTATTATCATTATTACTATTGTTATTADesign primers
857514TTTTATTTTTTATTTTTTTTACTTATTTTTDesign primers
860109ATATAATATATATTATATAATATADesign primers
865852GAATTTGATTTTGAATATGAAGTTAAATTTDesign primers
888213ATTAAATTATATTGATTTATAATGAATTATATDesign primers
905366TTAAATTAATTTAAATAAAATGAAADesign primers

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