Microsatellites /Tandem Repeats database

Genome: Rhodococcus pyridinivorans SB3094

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
234612GCACCT-GCACCT-GCACCT-GCACCT-GCACCTDesign primers
284686AGTGACACCGACTTCG-AGTGACACCGACTTCG-AGTGACACCGACTTCGDesign primers
340103ACGCGGCCGGGACGGCCTGTTCC-ACGCGGCCGGGACGGCCTGTTCC-ACGCGGCCGGGACGGCCTGTTCC-ACGCGGCCGGGACGGCCTGTTCCDesign primers
381387GTGGCGCGACTA-GTGGCGCGACTA-GTGGCGCGACTADesign primers
391860AGCAGCAACAGCAGGCCGCCGCGC-AGCAGCAACAGCAGGCCGCCGCGC-AGCAGCAACAGCAGGCCGCCGCGCDesign primers
423961CAGCGCAGCCGGTCGACA-CAGCGCAGCCGGTCGACA-CAGCGCAGCCGGTCGACA-CAGCGCAGCCGGTCGACADesign primers
464605CTGCATGTTCGAGCA-CTGCATGTTCGAGCA-CTGCATGTTCGAGCADesign primers
511872ACCGGCACG-ACCGGCACG-ACCGGCACGDesign primers
560257CGCCGAACTCTTCGA-CGCCGAACTCTTCGA-CGCCGAACTCTTCGADesign primers
570458ACCGATACGAGTGGC-ACCGATACGAGTGGC-ACCGATACGAGTGGCDesign primers
639155CCGGTG-CCGGTG-CCGGTG-CCGGTGDesign primers
711631GCGGCGGCC-GCGGCGGCC-GCGGCGGCCDesign primers
799613CTCGCCGCC-CTCGCCGCC-CTCGCCGCCDesign primers
1044779CCCTGCCTCGGCGAACGT-CCCTGCCTCGGCGAACGT-CCCTGCCTCGGCGAACGTDesign primers
1067631CGGTGTCCCCGCGACT-CGGTGTCCCCGCGACT-CGGTGTCCCCGCGACTDesign primers
1371400GCACGG-GCACGG-GCACGG-GCACGGDesign primers
1555370GACACGGCAGTGCGATCGGTGCCG-GACACGGCAGTGCGATCGGTGCCG-GACACGGCAGTGCGATCGGTGCCGDesign primers
1682896GTGCCCACTCCGCT-GTGCCCACTCCGCT-GTGCCCACTCCGCTDesign primers
1705111ACCGTCACGGAGTGACGCCGTGGAC-ACCGTCACGGAGTGACGCCGTGGAC-ACCGTCACGGAGTGACGCCGTGGACDesign primers
1963714CGGTGC-CGGTGC-CGGTGC-CGGTGCDesign primers
2028064CCGTCTTCGACACCGTGT-CCGTCTTCGACACCGTGT-CCGTCTTCGACACCGTGTDesign primers
2033481CACACCGGGGTCCGCAGC-CACACCGGGGTCCGCAGC-CACACCGGGGTCCGCAGCDesign primers
2033573CTCGGCGCG-CTCGGCGCG-CTCGGCGCG-CTCGGCGCGDesign primers
2063579GCACCGACCGACGGGTCGTTTCT-GCACCGACCGACGGGTCGTTTCT-GCACCGACCGACGGGTCGTTTCT-GCACCGACCGACGGGTCGTTTCTDesign primers
2106020CTCGCC-CTCGCC-CTCGCC-CTCGCC-CTCGCCDesign primers
2109241TGTTCGGCTGACCCTGC-TGTTCGGCTGACCCTGC-TGTTCGGCTGACCCTGC-TGTTCGGCTGACCCTGC-TGTTCGGCTGACCCTGCDesign primers
2192084TGCGGAGTACCGCCGTGACACCGC-TGCGGAGTACCGCCGTGACACCGC-TGCGGAGTACCGCCGTGACACCGCDesign primers
2293479TCAGTCGCGCTCGACCGCGGTGCGG-TCAGTCGCGCTCGACCGCGGTGCGG-TCAGTCGCGCTCGACCGCGGTGCGGDesign primers
2407600GTTCCCCTGTGCGGATCA-GTTCCCCTGTGCGGATCA-GTTCCCCTGTGCGGATCA-GTTCCCCTGTGCGGATCA-GTTCCCCTGTGCGGATCADesign primers
2426466GGTTCGACACCGAGG-GGTTCGACACCGAGG-GGTTCGACACCGAGGDesign primers
2437238GCAGGT-GCAGGT-GCAGGT-GCAGGTDesign primers
2479049CTCGCCTGCGACTCGGTGACACTG-CTCGCCTGCGACTCGGTGACACTG-CTCGCCTGCGACTCGGTGACACTG-CTCGCCTGCGACTCGGTGACACTG-CTCGCCTGCGACTCGGTGACACTG-CTCGCCTGCGACTCGGTGACACTGDesign primers
2517137CAGCGCGGTGCGCTCGATCAGACA-CAGCGCGGTGCGCTCGATCAGACA-CAGCGCGGTGCGCTCGATCAGACADesign primers
2999182CTCGCC-CTCGCC-CTCGCC-CTCGCC-CTCGCCDesign primers
3002403TGTTCGGCTGACCCTGC-TGTTCGGCTGACCCTGC-TGTTCGGCTGACCCTGC-TGTTCGGCTGACCCTGC-TGTTCGGCTGACCCTGCDesign primers
3085246TGCGGAGTACCGCCGTGACACCGC-TGCGGAGTACCGCCGTGACACCGC-TGCGGAGTACCGCCGTGACACCGCDesign primers
3186641TCAGTCGCGCTCGACCGCGGTGCGG-TCAGTCGCGCTCGACCGCGGTGCGG-TCAGTCGCGCTCGACCGCGGTGCGGDesign primers
3300762GTTCCCCTGTGCGGATCA-GTTCCCCTGTGCGGATCA-GTTCCCCTGTGCGGATCA-GTTCCCCTGTGCGGATCA-GTTCCCCTGTGCGGATCADesign primers
3319628GGTTCGACACCGAGG-GGTTCGACACCGAGG-GGTTCGACACCGAGGDesign primers
3330400GCAGGT-GCAGGT-GCAGGT-GCAGGTDesign primers
3459361GAGGATTCGGGCGAG-GAGGATTCGGGCGAG-GAGGATTCGGGCGAG-GAGGATTCGGGCGAGDesign primers
3523975CGGCGCTCGGGTC-CGGCGCTCGGGTC-CGGCGCTCGGGTCDesign primers
3546778GCAGTC-GCAGTC-GCAGTC-GCAGTCDesign primers
3581101CCTGCTGGTCGTAACCGC-CCTGCTGGTCGTAACCGC-CCTGCTGGTCGTAACCGCDesign primers
3737874GCCGAA-GCCGAA-GCCGAA-GCCGAA-GCCGAA-GCCGAA-GCCGAA-GCCGAA-GCCGAA-GCCGAADesign primers
3869528CCCGAG-CCCGAG-CCCGAG-CCCGAG-CCCGAG-CCCGAG-CCCGAG-CCCGAG-CCCGAG-CCCGAG-CCCGAGDesign primers
4067786CGCTGC-CGCTGC-CGCTGC-CGCTGC-CGCTGCDesign primers
4280331GCGGGAGGCACCGGGCGCGAGTCC-GCGGGAGGCACCGGGCGCGAGTCC-GCGGGAGGCACCGGGCGCGAGTCCDesign primers
4333263CGTCTT-CGTCTT-CGTCTT-CGTCTT-CGTCTTDesign primers
4372050CACCGAGGTCGTGAG-CACCGAGGTCGTGAG-CACCGAGGTCGTGAGDesign primers
4646493GATCAGGGCAGTGAT-GATCAGGGCAGTGAT-GATCAGGGCAGTGATDesign primers
4670560CCGCCCGTGATCCGACA-CCGCCCGTGATCCGACA-CCGCCCGTGATCCGACADesign primers
4896991CCCGGTGCC-CCCGGTGCC-CCCGGTGCCDesign primers
4932580CGACCTCGCGATCACCTGAGCGGT-CGACCTCGCGATCACCTGAGCGGT-CGACCTCGCGATCACCTGAGCGGTDesign primers
5138232CGACTTCCGGTACCGAAC-CGACTTCCGGTACCGAAC-CGACTTCCGGTACCGAACDesign primers
5161521CGGTGC-CGGTGC-CGGTGC-CGGTGCDesign primers

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