Microsatellites /Tandem Repeats database

Genome: Pyrobaculum sp. 1860

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
131258CGGAGTCCCGGGGTCCCGGAGTACDesign primers
198521CCGCCGTCGCCGCCGCCGCGGCCGDesign primers
209180CGGCGGCGGCGAAGGCGGCGGCCGDesign primers
271553GCCCTCGGCCTCGCCCTGGCCCACDesign primers
280132GGGCGGCGGCGGGGCCGGGGGCGCDesign primers
380118CGTCGACGTCCACGTCCACCTCGACGTCGTDesign primers
428650GGTGAAGGTGGAGGTGAAGGGGAADesign primers
471601TAGCCCTGGCCCTAGCCCTAGCCCDesign primers
724233CCACCCCCACCGCCACACCGACCCDesign primers
783661CTTCTCCTTGTCCTTCTTCTTGTCDesign primers
986141AGAAGAAGAGGAAGAGGAAGAAGTDesign primers
1019631GCCATA-GCCATA-TCCATA-GCCATADesign primers
1051123CGGCGTCGACGTAGGCGTCGCCGTDesign primers
1113304GAGGAGGGGGAGGAGAAGGAAGAGDesign primers
1150666AACAGCCACAGCAACAACAACAGCDesign primers
1168868CATAAACGCCGCCATAAACATCGCCATAAAAGCCGTDesign primers
1194176TCTCCTCTTCTCGTCTTCTCCACTDesign primers
1277673GGCGGCCGCGGCGGTGGCCGCGGCDesign primers
1362394CCTCCACCACCACCTCCACCTCCCDesign primers
1368474CGCCGTGGCCGTCGCCGTCGCCGCDesign primers
1444751CGCGGCGAGGCACGGCGAGGCCCGGDesign primers
1477294GAGAGCCCCGGAGGGGCCCGGTGAGCGCCGDesign primers
1534484GTGGAGGCTGTGGAGCCTGTGAAGGCTDesign primers
1568351GCG-GCG-GCG-GCG-CCG-GCG-GCG-ACGDesign primers
1568675ATGGCGAGGGCGATGGCTATGGCCDesign primers
1703136TCTGCATCTCGGCGACTGTCCTCTGAGTCTCGGCGATGGTCCTCTGCATATCGGCTATCGTCCDesign primers
1704260GGAGGTGGAGCTGGACGTGGTGGTDesign primers
1715520CGCCTCCGCCACAGCCTCCGCCTADesign primers
1759450TCACATTTTAACACATGTTATCACTTTTTTDesign primers
1881550ACGAGG-CCGAGG-GCGAGG-GCGAGGDesign primers
1927114CCCCGCCCCCACCCCCTCCGCCGCCCCCGCDesign primers
1927250GCCTCC-GCCTCC-TCCGCC-GCCCCC-GCCGCC-TCCACCDesign primers
1993417GGCGGCGGCGGGGGCGCCGTCGGCDesign primers
2017300CCGCCACGGCCACCTCCACCGCCTDesign primers
2052068CGCCTCTTTCCACGTCTTTCCGCCTCTCTCDesign primers
2058245GAAAGAGGTGGAAAGAGGTAGAAAGAGACGDesign primers
2138471TGGCGGCGGTGGCGGCGGCGCTGGTGGCGGCGGCCGDesign primers
2177658GCGGCCCTG-GCGGCCCTG-GCGGCGCTGDesign primers
2198617CGGCGCGACGCGGGGAGGCGCCGCGDesign primers
2231258TTCACCTTCAGCTCCACCGTCACCDesign primers
2287301CCTCCTCCTCTTTCTCCTCCTCCTDesign primers

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