Microsatellites /Tandem Repeats database

Genome: Porphyromonas asaccharolytica DSM 20707

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
12115CCTCTAATCTCTAACTTCTAACCTCTAATCTCTAADesign primers
33096ATTTCTAATCTCTAACTTCTAACTTCTADesign primers
42571CTCTAATCTCTAACTTCTAATCTCTAATDesign primers
49012GTCTAATCTCTAACTTCTAACCTCTAAAGTCTAACCTCTAACTTCTAACCTCTAACCTCTAAADesign primers
64552TACTCCTCACCCTACTCCTCAGCAGCCTCCTCACCCDesign primers
162277ACTCTAACCTCTAAAGTCTAATCTCTAADesign primers
163440CCTCTAATCTCTAACCCCTAATCTCTAADesign primers
170224GGTGGCGGAGGCGGTGGTGGAGGCDesign primers
205408CCTCTAATCTCTAACCTCTAATCTCTAADesign primers
233678CGTCTAATCTCTAACTTCTAACCTCTAAAGTCTAATCTCTAADesign primers
260950TTAGAGATTAGAAATTAGAGGTTAGAGATTAGAGGDesign primers
278444TCACGATCATCACGACCATCACGATCADesign primers
292448CACTAGGAG-CACTAGGAG-CACTAGAAGDesign primers
306120CCTCTAATCTCTAACTTCTAACCTCTAADesign primers
306661CTCTAACTTCTAACCTCTAATCTCTAATDesign primers
307180CCTCTAATCTCTAACTTCTAACCTCTAADesign primers
308331GGTTAGAGGTCAGAAGTTAGAGATTAGADesign primers
308382AGCCAAC-AGCCAAC-AGCTAAC-AGCCAACDesign primers
333279GTAAGGCTCTGGGTGAGACTCTGGGTAAGACTCTGGDesign primers
342532CCTCTAA-CATCTAA-CCTCTAA-CCTCTAA-CTTCTAA-TCTCTAA-CCTCTAADesign primers
342864CCTCTAATCTCTAACCTCTAATCTCTAADesign primers
363572TGGAACTTTTTAGTTCCAAGGGAGGAACTCTTTAATTCCAACGGAGGAATTTTTTAGTTCCAACGGAGGAACTTTTTAGTTCCAAGGGDesign primers
369610CTCTAACTTCTAACCTCTAATCTCTAATDesign primers
395516GGAGCAGGAGTAGGAGCGGGAGGADesign primers
442925CTAATCT-CTAATCT-CTAACCT-CTAATCCDesign primers
463943ATCTAATCTCTAAC-TTCTAATCCCTAAC-TTCTAACCTCTAAC-TTCTAACCTCTAAC-TTCTAACCTCTAACDesign primers
504579TAAACGATTCCTCCGAAGTTTCATTTGATTCCTCCGAAGTTTCATTTGATTCCTCCGAAGTTTDesign primers
541076ACTAGTGGTACTAGTGATGCTAGTGGTDesign primers
543754TCTCTAA-TCTCTAA-CCTCTAA-CCTCTAADesign primers
575942TTAGAGATTAGAAATTAGAGGTTAGAGADesign primers
585834TTTAGAGGTTAGAGATTAGAGGTTAGAGATTAGAGDesign primers
626798CTCTAATCTCTAACTTCTAATCTCTAACDesign primers
646618AGAAATTAGAGATTAGAAGTTAGAGATTDesign primers
661020AGAAGTTAGAGGTTAGAGATTAGAGGTTAGAAGTTAGAGGTTAGAAGTTAGAGATCDesign primers
661108TCTAACCTCTAACTTCTAATCTCTAACTTCTAACCDesign primers
696753ACCTCTAATCTCTAACTTCTAACCTCTCDesign primers
743871CTAATCTCTAACCTCTAATTTCTAATCTDesign primers
751059ATTAGAGATTAGAAGTTAGAGATTAGAGDesign primers
751119GATTAGAGGTTAGAGATTAGAGGTTAGADesign primers
751201GGTATCGGAGGGTGTAGGAGGGTGTCGGAGDesign primers
780522CTCTAAT-CTCTAAC-TTCTAAT-TTCTAAT-CTCTAACDesign primers
794530ATTAGAGATTAGAAGTTAGAGATTAGAGDesign primers
813769GGTTAGATACTAGA-AGTTAGATACTAGA-AGTTAGATATTAGADesign primers
865141TGGCTTCTCTTGGTTCTT-GGGCTTCTCTTGGTTCTT-GGGCTCCTCTAGGTTCTTDesign primers
901965CCAACAG-CCAACAG-CTAACAG-CCAATAGDesign primers
957499AAATTAG-AGGTTAG-AGGCTAG-AAGTTAG-AGGTTAG-AGGTTAG-AGATTAG-AAGTTAG-AGATTAGDesign primers
961463GGGAAGAAATAAAACTTCGGAGGAATCAAATGAAACTTCGGAGGAATCAAATGAAACTTCGGADesign primers
969238GATTAGATATTAGAGGTTAGATATTAGADesign primers
980767TCTCAAATCTCCACGTGGAAATTCTCAAATCTCCACGTGAAGAATAAAAAATCTCCACGTGGAGATDesign primers
984260GCCGTA-ACCGTA-ACCGTA-GCCGTA-ACCGTA-GCCGTA-ACCGTADesign primers
1027861TATCGACTCGATTGTTATCGATTCGATTGTTATCGACTCAATCATDesign primers
1064528TA-TG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AGDesign primers
1065998CGATAAGGCATCTGATAAGACATCTGATAAGACATCDesign primers
1068819ATTAGAGATTAGAAGTTAGAGATTAGAGDesign primers
1068928CACCAAT-CACCAAT-CGCCAAT-CACCAAADesign primers
1129712GATTAGAGGTTAGAGATTAGAGGTTAGADesign primers
1129786TCTAGTGTCTAACCTCTAATCTCTAACCTCTAATCTCTAACCDesign primers
1165089TCTAATTTCTAACTTCTAATATCTAATCDesign primers
1172300ATTAGAG-GTTAGAG-GTTAGAG-GTTAGAGDesign primers
1172356AAAGTCTAATCTCTAACTTCTAATCTCTAATTTCTAATCTCTDesign primers
1193170GAAATTAGAAGTTAGAAGTTAGAGATTAGAGATTAGAAGTTAGAGATTADesign primers
1197998CGTCGCGACGGTCGTCGTGTCGGTCGTTGCGCCGGTDesign primers
1202034GCTCTAA-CCTCTAA-CCTCTAA-TCTCTAADesign primers
1204822TCTCTAACCTCTAACCTCTAATCTCTAACCTCTAACCTCTAATATCTAATCTCTAATATCTAATCTCTAATATCTAACCTCTAATCTCTATDesign primers
1217761TCTAACCTCTAATCTCTAACTTCTAACCDesign primers
1254659AGTTCCAAGGGAGGAACTCTTTAGTTCCAGCGGAGGAATTTTTTAGTTCCAAGGGAGGAACTTTTTDesign primers
1272555TCGTGGTCATGG-TCGTGGTCATGG-TCATGGTCGTGG-TCGTGGDesign primers
1343778CTTGCTAGA-CTTGCTAGA-CTTGCGAGADesign primers
1343955GGGCTCTTGGACTGCTGGCTCTTTGACGGCTGGCTCTTGGGCTGCDesign primers
1348557AGTAGAGATTAGAAGTTAGAGATTAGAAATTAGGGATTAGAADesign primers
1367343GGTGCT-GGAGCT-GGAGCT-GGTGCT-GGTGCTDesign primers
1432612AAATTAGAGATTAGAAGTTAGAGATTAGDesign primers
1432740TTGGAACTTTTTAGTTCCAAGGGGGGAACTTTCGAGTTCCAAGGGAGGAACTTTTTAGTTCCAAGGDesign primers
1480523CTAACCTCTAATCTCTAACTTCTAACCTDesign primers
1480688ATTCTCCACGTGGAGATTTGAGAATTTCCACGTGGGAATTTGAGAATTTCCACGTGGGAATTTGAGDesign primers
1514964ATAAAGGGAAAAAGGGAAAAAGGGDesign primers
1519055AAAGTCAAGGAGTA-AAAGTCAAGGAGTA-GAAGTCAAGGACTADesign primers
1534009GGAACTTTTTAGTTCCAAGGGAGGAACTCTTTAGTTCCAGCGTAGGAACTCTTTAGTTCCAAGGGADesign primers
1546282TTAGAGGTTAGAAGTTAGACGTTAGGGGDesign primers
1569532GATTAGAGGTTAGAGATTAGAGATTAGGDesign primers
1638284CTCTAACTTCTAACCTCTAATCTCTAATDesign primers
1656846AGTTAGAGATTAGATGTTAGATATTAGAAGTTAGAGGTTAGADesign primers
1657022CCCTCCGATCCACTCCGACCCACTCCGATADesign primers
1706166TTCGATATCCACGTAGATATTTTTCATTCTCCACGTGGATATTTTTCATTCTCCACGTGGATATTTDesign primers
1739089CTAAATTTCCAAGGGGGGAAAGTTGAGTTTCCAAGGGAGGAAAGTTGAATTTCCAAGGGAGGAAAGDesign primers
1749344TTAGAAGTTAGAGGTTAGAGGTTAGAAGTTAGAGGTTAGAAADesign primers
1749759TCTAATC-TCTAATC-TCTAACC-TCTAATTDesign primers
1821551TGGAACTTTTTAGTTCCAAGGGTGGACCTTTTCAGTTCCTAGGGAGGTACTTTTCAGTTCCTAGGGDesign primers
1821618GGAAATTTCTTTTTCCAACGGAGGAAATTCTTTTTTCCAACGGAGGAAATTCTTTTTTCCAACGGADesign primers
1832294GGAACTTTTTAGTTCCAAGGCA-GGAACTTTTCGGTTCCAACGGA-GGAACTTTTCGGTTCCAACGGA-GGAACTTTTTAGTTCCAAGGCA-GGAACTTTTCGATTCCAAGGGADesign primers
1915247CTAGAGGTTAGAAATTAGAGGTTAGAGATTAGAGGTTAGAGADesign primers
1957511AAACTACCCAAGAAAAGCCTAAGAAAGACCCAAGAAAAGCCCAAGAAAGACCCAAGAAAAGCCCAADesign primers
1968192TGTGGCACTACAGTTTCCTACCCGTGGCACTGGAGTTTCCTGCCTATGAAACTAGAGTTTCCTACCTATGAAACTAGAGTTTCCTACCDesign primers
1992752TCTAACCTCTAACATCTAATCTCTAACATCTAATCDesign primers
1995436TCTCTAA-TCTCTAA-CCTCTAA-TCTCTAADesign primers
2009402TTTATAGTGTTATAGTTTTATCGTDesign primers
2040418GGAACTTTTTAGTTCCAAGGGAGGAAATCTTTAGTTCCAGCGGAGGAACTTTTCGGTTCCTACGGADesign primers
2052686TTCTGATCCCTCCCTTGGGATCTTTTCGTTCCTCCCTTGGGATCTTTTCATCCCGCCCTTGGGATTDesign primers
2098206AACTTCTAATCTCC-GACTTCTAATCTCC-GACCTCTAATCTCCDesign primers
2130931ATTGAAAAGTTCCTCCCTTGGAACTGAAAAGTTCCTCCCTTGGAACTAAAGAGTTCCTCTCTTGGADesign primers
2142927TCTAATCTCTAATACCTAATCTCTAACCDesign primers
2152756CTCTAACCTCTAATGTCTAACCTCTAATDesign primers
2182569CATCTCT-AATCTCT-AATCTCT-AATCTCTDesign primers

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