Microsatellites /Tandem Repeats database

Genome: Marivirga tractuosa DSM 4126

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
8576GAATGAGCATGAGAAAGAGTATGADesign primers
87950ATATAAATAAATATAATCAAATCTAATTAADesign primers
202310GCAGCAGCTGCAGAAGCTGCAGCATCTDesign primers
214215CTACTCAGTACCCACTACCCATTACCCACTACTCATTACTCADesign primers
227396AAATTA-AAATTA-TAATTA-AAATTTDesign primers
248718CTGCACTACTTATTACCGAAATACTTATTACCGAAATACTTATTADesign primers
303848TAGTAGCTCCGTCAATAGCTCCGTCAATAGCTCCGTDesign primers
640347TATATTAATATATAAATATATTAADesign primers
702271GTTGGAAGTTGGAGGTTAGAAGTTGGGADesign primers
741071AAATGAT-GAATGAT-TAATGAT-TAATGATDesign primers
746812ATAATCAAGATCATCAAGATCATCAAGDesign primers
766710CGCAAAGGCGCGAAGGCGCAAAGTDesign primers
769956TTTCCATAGCCATAGCCGTAACCATAGCCGTAGCCGTAGCCGTAGCCATAGCCGDesign primers
773223AATTACGAATTAGGAATTATGAATTAAGDesign primers
773383AGAATTACGAATTAGGAATTACGAATTADesign primers
794698TAAAGAA-TAGAGAA-TAGAGAA-TAGAGAADesign primers
831783TTCTAAACTCTAGGTTCTAGACTCTAGACTCTAGACTCTAGGDesign primers
897091ATACTTAAAACTTACTACTTAATACTAADesign primers
899464TAGAATCTAGAACCTAGAGTCTAGAATCDesign primers
1043681AATTTTTCAACCTTTTTCAAAAGTTTTGAADesign primers
1190490ATCATCATCGTCATCATTATCATCDesign primers
1295217TAGAATCTAGAGTCTAGAACCTAGAATCDesign primers
1299299TTAAGTTTTAGGTTATAAGTTTTAAGTGDesign primers
1506476TTTTTTTTGTTTTTTTTTCTTTTCTCTTTTDesign primers
1602461TAAACAATAAATAAACAAAAATTAAACATGAAADesign primers
1683028TTAAGTA-TTAAGTA-ATAAGTA-TTAGGTADesign primers
1723732AAAAATAAGAATAAAAGTAAAAAGDesign primers
1800483GGCTCACAGAAGATCACAGAAGATCACAGADesign primers
1889272ATTTATTTCAATTTTATTTCTACATTATTTCAADesign primers
1964599ACTCACTACTCATTACCCACTACTCAATDesign primers
2023778AATCTAGAGTCTAGCATCTAGACTCTAGDesign primers
2140526TAACTTATTACTTAAAACTTATAACTAADesign primers
2198641AGAAAGAAA-AGAAAGAAA-AGAAGGAAADesign primers
2241933TTACTTATTACGTATAACTTAATACTTATTACATADesign primers
2391572AAGAAGAAAAAGAAGAAGAGGAAGDesign primers
2634632GAGTATC-AAGTATC-AAGTATC-AAGTATCDesign primers
2814648TCCATTTCCATGCCCATTTGCATTDesign primers
3205164AAAAATATAAATGAAAATAAAATTDesign primers
3267414GAATACAAATAAATACTAATGACTACAAGTDesign primers
3332669GCCTAA-GCCTCA-GCCTCA-GCCTAADesign primers
3496068AAATTACATTAAATGCAATTGAATTDesign primers
3742813TCTTT-TCTTT-TTTTT-TCTTT-TTTTTDesign primers
3835188ATGCGAAAATGGGAAAATGGGAAADesign primers
3979736ATAAAAG-AATTATG-AATTATG-AATTATG-AATTATG-AATTATG-AATTATG-AATTATG-AATTATGDesign primers
4073730TCCTCTTCCTCTTCTTCCTCCTCTTCTDesign primers
4077579ATAATTACTAATTAATAATTATTAATTADesign primers
4151038TCAACACCTAAACACCTAAACACCDesign primers
4211475TATTCTAATTCTTATTTTGATTCTDesign primers
4240933GATATTGATTTTGTTATTGATATTDesign primers
4316614TTTTA-TATTT-AGTTT-AAATT-TATTT-TATAT-TTTDesign primers
4463261TGACTCTTGAATCTAGACTCTTGATTCTDesign primers
4483232TTTTTC-TTTTTC-TTCTTC-TTTTTADesign primers

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