Microsatellites /Tandem Repeats database

Genome: Geobacillus sp. Y412MC61

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
232761CCGAGGCGTTGTTGCTGTTCTTCGAGGCGCTGTTGTCGTTCTTCGAGGCGTTGTTGTCGTTCTTCGAGGCGTTGTTGTCGTTCTDesign primers
331026TCTAAAAAATATTGAAAAAATATTAAAAAAATATTAAAAAAATADesign primers
450352CTTTTTTTCGTTTTTTCCTTTTTTDesign primers
512634CCGCTGTTGTTTGTTCCTTGGTTGTTTGTTCCTTGGTTGTTTGTTDesign primers
556040TGTTTACTCTTGATTCGATGCTGTCTACTCTCGCCTCGATGCTGTTCACTCTCTCTTCGATGCDesign primers
607671AAAGATATA-AAAGATATA-AAAAATATADesign primers
680947GAG-GCG-AAG-GCG-GCG-GCG-GGG-GCGDesign primers
718532GGCGGCGGCAGCGGCGGCGGCGTCDesign primers
743307TTAATTAC-GTAATTAC-GTAATTAC-GTAATTACDesign primers
751554GAATTTTTATGCTTTTTTATGAATGTGTATDesign primers
801338GATGTTGAGGCGATGAAAAAAGACATGGATGCGATGAAAAAAGACATGGATGCGATGAAAAAADesign primers
806528TAGTTATCATTATTTATAATTAGATATCATDesign primers
1011988GGCGGCTTTAGCGGCTTTGGCGGTTTTDesign primers
1162867GAACAAACGAACAAAAAAACAAACDesign primers
1167396TGCTCTTTTCGGATTTCTTGTTGTTCTCTCCGAATTTCTTGTTGTTCTTTTCGAATTTCTTCTDesign primers
1168883CGGTGCTTGCGGCGCTTGCCGTGCTTGDesign primers
1246922GCTTTCTCCATTCCTTTCTCCATCCCTTTCTCTATTDesign primers
1324117AA-AA-AA-AT-AA-AA-AA-TA-AA-AA-AC-AA-ADesign primers
1355466TTCGCTTTTTCGCGTTTTCGTTTTDesign primers
1865195AATAATATAATATAAAACAAAATGADesign primers
1922875TATGATAAAATAGGAAAAAAAGTGATAAAADesign primers
2002798TCGCCA-TCGGCA-TCGGCA-TCGTCADesign primers
2235742TCCTGCTGTTCTTTCCGCATTTCTTGCTGTTCTCTTCGGATT-TCCTGCTGCTCTTTCCGTATTTCTTGCTGTTCTCTTCGGATT-TCCTGCTGCTCTTTCCGTATTTCTTGCTGTTCTCTTCGGATT-TCCTGCTGCTCTTTTCGCATTDesign primers
2305524ATGAAAAAATGATAAAAAAATCATAAGAAAATGDesign primers
2387970GCGGCGGCAGCGGCGGTGGCCGCGDesign primers
2512875GAAGGGGAAGTGGAAGGGGAATGGDesign primers
2648098ATG-ATG-GTG-ATG-ATG-ATG-GTG-ATGDesign primers
2663809CT-TT-TT-CT-CT-TT-TC-CT-CT-AT-TT-CTDesign primers
2840103TCCTTGCTTCAT-CCCTTGCTTCAT-CCCTTGCTTTATDesign primers
2848297TGTTTCATTCCTTGTTTCATTCCCTGTTTGATCCCTDesign primers
2865777ATTTTTGTAGATTTCCGTAGATTTTCGTAGDesign primers
2974999CCTC-ATTC-CTTC-CTTC-ATTC-CTTC-TTTC-ATTC-CTTCDesign primers
3112498CGCCGCCCCCGCCTCCGCCGCCGTDesign primers
3144058GCAGAAAGGGGAGAAAGGGGAGAAAGGDesign primers
3248170AGTTTCCAAGCCATTCAACCGCGTTTCCACGCCGTCCAACCGGGTCTCCACGCCATTCAACCGCGTTTCCACGCCGTCCAACCGGGTCTCCACACCATTCAACCGDesign primers
3248294CGGGTCTCCACGCCATTCAACCGCGTTTCCACGCCGTCCAACCGGGTCTCTACGCCATTCAACDesign primers
3248378CGGGTCTCCACGCCATTCAACCGCGTTTCCACGCCGTCCAACCGGGTCTCTACGCCGCCCAACDesign primers
3277947TCGTGCCGATTTGCGTGCCGATGTCCGTGCGGATTTDesign primers
3443106GCTGCGCCGATGCGCCGATGCGCCDesign primers
3504748ACTCATCGTATTCATCGTATTCATCGTDesign primers
3549316AACGTATTTACAATGTATTGACGACGTATTTATGACGTATTGACDesign primers

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