Microsatellites /Tandem Repeats database

Genome: Anaerococcus prevotii DSM 20548

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
192TAAGATTTTAATATTTTAAGCTTTDesign primers
65845AAAAATATAAAAAAATAAAACTATDesign primers
93750CGAACATAAT-AAAACATAAT-AAAACATAATDesign primers
212291AAGTCCCAAAGGCCCAAAGACCCADesign primers
334696GAAGACAAGGAAGAAAAGGACGACAAGDesign primers
365692AAA-AAA-GAA-GAT-AAA-AAA-GAA-GAA-AAA-ACT-GAA-GAT-AAA-AAA-GAA-GAADesign primers
398555AGATTTGGATTTTGATTTAGATTTDesign primers
431704GAAGGATTTTGAAGGAATATGATTGATTTTDesign primers
528602ATAAAGAAAAAATAAAGGAGAAATAATGAAAAADesign primers
545412GTTTTATCCTTAATAGAATCTTTATCTTTAATAGAATCTTTATCTTTAATAGAATCTTTATCTTTAATAGAATCTTTATCTTTAATAGAATCTTTATCTTTAATAGAATCTTTATCCTTAGTAGAADesign primers
669325TTAAAGAAATTTCAAGCAATTAAAAGAAATDesign primers
813029AGAAAAGATGACAAAAGAAGAGAAAAGAATDesign primers
854953AAGAAAACAAAAGTAAAGATAACAADesign primers
902941ATATTA-ATACTA-ATACTA-ATATTA-ATATTA-ATACTADesign primers
910579CTGGCACGATTTTGGCACGATTCTGGCACATTTDesign primers
937723TTTGATGTTTCTTGACGTTTTTTGATTTTCDesign primers
1016361TAATAGAATACAATATGATAAAATADesign primers
1025067TCATTTTCT-TCTTTTTCT-TCTTTTTCT-TCTTTTTCTDesign primers
1155469TTTTTTCTAAATTTTTATAAATATTTCTAADesign primers
1215905ACTTCTTGAACTTCTTCAACTTCTTGGDesign primers
1216232TCTTCAGCTTTTTTTGCTTCTTCAGCCTTCTTAGCTTCTTCGGCTTTTCTTGCTTCTTCGGCTTCTTTTGCTDesign primers
1216333TTTTGCTTCTTGAGCTTTCTTAGCTTCTTCAGCTTTCTTTGCTTCTTGAGCTTTCTTAGCTTCTTCAGCTTTCTTTGCTTCTTGAGCTTTDesign primers
1230687TGC-TGC-TGC-TGG-AGC-TGC-TGC-TAC-TGC-TGCDesign primers
1255307TTCTT-TTATT-TTCTT-TTCAT-TTCTTDesign primers
1266726TATTATATCATATGATATAATATTADesign primers
1294979AATAAA-GATAAA-GACAAA-GATAAA-GATAAA-GACAAA-GACAAA-GATAAA-GATAAA-AATAAADesign primers
1360222TATTTTATTATTTTAGTATTATATDesign primers
1413770AGCAAAGGCAAAAGCCAAAGAAAADesign primers
1466760TTTTATTATATTTTATTTAATTTAADesign primers
1560450AGTCTTAATCTTAGTCTTAGTTTTDesign primers
1620051TGGTGGTGTTGGTGGTGTTGGAGGDesign primers
1785112TCATCATCTTCATCATCGTCATCCDesign primers
1797522TTATCTTCTAATATCTTCTGTTTTCTTCAADesign primers
1854903ATCATAACCATAATCATGACCATADesign primers
1859983ATCTACAACTACATTTACATCTTCDesign primers
1874532TATTTCTTCTTAGTTCTCCTTATTTTTTCTDesign primers

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