Microsatellites /Tandem Repeats database

Genome: Streptococcus pyogenes NZ131

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
137179CTTGTTTTAGCTATTTTTAGCTTGTTTAACDesign primers
157896GCTGGAAAAAAAGCAGGGAAAAAAGCTGGAAAAGAADesign primers
158019AAAGAAGGGTATAAAGATGGGTACAAAGAGGGTTATDesign primers
267154AATAAAAAAGTACAAAAAAAGTAAAAAAAGAGTDesign primers
300364ATCAAACAAAAATCAAAGAAACAACAAAGAAAADesign primers
327617ATGGCAAATAAAGGCAAGTAATGGCTGATADesign primers
369576CTTTTTATACGTTTTATACATTTTATADesign primers
735075ACAGCACCAGCAACAGTAGCAGCADesign primers
830242GTGAA-CAAAA-CAAAA-CAAAA-CAAAA-CAAAA-CAAAA-CAAAA-CAAAADesign primers
847816GCTGCTGCAGCTGCTGGTGGTGCTDesign primers
852234AGAAAA-TGAAAA-GGAAAA-GGAAAADesign primers
917221TCTTTCTTTTTCTTTCTTCTTATTTCTGTTDesign primers
1004882AGTTAAGTGAAGTTAAATTAATTTADesign primers
1078700CTTCATTTTCATCCTCATGTTCATDesign primers
1144174CTTCATCTA-ATTCATCTA-ATTCATCTA-ATTCATCTADesign primers
1320858TTTTCAAACTTTTCAAAGTTTTCAAGCDesign primers
1411363TGGTTTGGGCTGATCAGTCGGTTTTGGCTGGTCAGTTGGTTTCGAATGATCAGTDesign primers
1496634CT-TT-AT-AT-CT-AT-AT-TT-AT-AT-CT-AT-CT-TT-TT-AT-CT-TTDesign primers
1535882TTC-TTC-ATC-TTC-TTC-ATC-TTC-TTC-GTC-TTCDesign primers
1561887CTTTTTCCACCTTTTCCACTTATTCCADesign primers
1655935GCTTCT-GCTTCT-GCTGCT-GCTTTTDesign primers
1705121GAAATTTGACCGACTTTTGACCGACTTTTGACCDesign primers

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