Microsatellites /Tandem Repeats database

Genome: Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
203CACCACCACCATTACCACCATCACDesign primers
196612GGCGAGATGGATCATGGCAACATGGATCACAGCGGGATGAATCATDesign primers
244014CGGCGGTAACGGCGGCAACGGCGGTCADesign primers
394463TGCTATCGCTATTACTATTGCGATDesign primers
423647TGCCGGTGCCTGTGCTGGTGCTGGDesign primers
514463GCGAAAGAGAAAGCGGAAGCGGAADesign primers
606247TTCCTTTCTTGCTTTCTTCCTCTCDesign primers
686748GCGGCAGCCGCATCGGCAGCCGCADesign primers
705569GACCCTCT-TACCCTCT-TACCCTCT-TACCCTCTDesign primers
736555TGGTGGTGGTCGTGGTGCTGGCGGDesign primers
981069TTGCGG-CTGCGG-CTGCGG-TTGCGGDesign primers
1120268CCGGAG-CCGGAG-CCGGTG-CCGGAGDesign primers
1194238ACGAAAAATAACCAGAAATAACAAAAAACADesign primers
1693796CAACGAGTCATCGAGTCATCGAGTDesign primers
2055585ATGGCG-GTGGCG-ATGGCG-GTGGCG-GTGGCGDesign primers
2121146CATGATGGCAGGATGGCAGGATGGDesign primers
2357269GCAGCGCCA-GCAGCGCCA-GCGGCGCCADesign primers
2572620ACGCCGTCGCACGCCGCCTCACGCAGTTGCDesign primers
2808790GCTTCA-GTGCCA-GTGCCA-GTGCCA-GTGCCA-GTGCCA-GTGCCA-GTGCCA-GTGCCADesign primers
2955534TATGGGTTTATGTGAGTTTATAAGGGTTTTDesign primers
3039655GTTGTGATGTTGTGTTGTTGTGTTDesign primers
3088806AAACCA-CCATCA-CGACCA-CGACCA-CGACCA-CGACCA-CGACCA-CGACCA-CGACCA-CGACCA-CGACCA-CGACCADesign primers
3128446CCGGCGCTGGCGCCGGTGCTGGCGDesign primers
3369624TCGCTT-TCGCTT-TCTCTT-CCGCTTDesign primers
3370391TCGCCGCCGTCGCCGCCATCACCGCCGDesign primers
3606392ATGCAGACGCAGATGCAAACGCAGDesign primers
3696746CACCAG-CACCAG-CGCCAG-CAGCAGDesign primers
3898209GCAGCGCCA-GCAGCGCCA-GCGGCGCCADesign primers
3966895TGATCATGTTCACGATCATGACCADesign primers
4014645CTGGCGCTGGTGCCGGCGCTGGTGDesign primers
4178636CCC-ACT-GCT-GCT-GCT-GCT-GCT-GCT-GCT-GCT-GCT-GCT-GCT-GCT-GCTDesign primers
4206597CGCGGTAAATCTCGATAAATGGCGGTAAAADesign primers
4323204GTCAGATTCTGACCCGTCAAAATCTGACGCATCAAAATCTGACCCDesign primers
4337531CTGCGCAGC-CGGAACAGC-CGGAACAGC-CGGAACAGC-CGGAACAGC-CGGAACAGC-CGGAACAGC-CGGAACAGC-CGGAACAGC-CGGAACAGCDesign primers

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