Microsatellites /Tandem Repeats database

Genome: Shewanella baltica OS185

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
167411AATACAAAA-AATACAAAA-AATACAAAA-AATACAAAA-AATACAAAADesign primers
485539TCGCTAAGAC-TCGCTAAGAC-TCGCTAAGACDesign primers
629540CTGATAA-CTGATAA-CTGATAA-CTGATAADesign primers
629569TGAGAGT-TGAGAGT-TGAGAGT-TGAGAGTDesign primers
714429GTTTGTT-GTTTGTT-GTTTGTT-GTTTGTT-GTTTGTT-GTTTGTTDesign primers
717954TCTGTT-TCTGTT-TCTGTT-TCTGTTDesign primers
994540ATGCTCGA-ATGCTCGA-ATGCTCGA-ATGCTCGA-ATGCTCGA-ATGCTCGADesign primers
1172803AACACAGAC-AACACAGAC-AACACAGAC-AACACAGACDesign primers
1181669CTAAAACAGCAGAG-CTAAAACAGCAGAG-CTAAAACAGCAGAG-CTAAAACAGCAGAGDesign primers
1275329TAGCATC-TAGCATC-TAGCATC-TAGCATCDesign primers
1279261AAAGCTAAGCACA-AAAGCTAAGCACA-AAAGCTAAGCACADesign primers
1296193CTCATCAG-CTCATCAG-CTCATCAG-CTCATCAG-CTCATCAG-CTCATCAG-CTCATCAG-CTCATCAG-CTCATCAG-CTCATCAGDesign primers
1308954GGTTAG-GGTTAG-GGTTAG-GGTTAG-GGTTAG-GGTTAGDesign primers
1620095TAATACGCCAT-TAATACGCCAT-TAATACGCCATDesign primers
1625607TAATACGG-TAATACGG-TAATACGG-TAATACGGDesign primers
1696002GGAACAA-GGAACAA-GGAACAA-GGAACAADesign primers
1877138ATTAGTGCC-ATTAGTGCC-ATTAGTGCCDesign primers
1926915AGAACTT-AGAACTT-AGAACTT-AGAACTT-AGAACTT-AGAACTT-AGAACTT-AGAACTT-AGAACTT-AGAACTT-AGAACTT-AGAACTT-AGAACTT-AGAACTTDesign primers
2050633AAGAAAGT-AAGAAAGT-AAGAAAGT-AAGAAAGT-AAGAAAGTDesign primers
2164056AATCACC-AATCACC-AATCACC-AATCACC-AATCACC-AATCACCDesign primers
2224552CCTGAGGTTGTG-CCTGAGGTTGTG-CCTGAGGTTGTG-CCTGAGGTTGTG-CCTGAGGTTGTGDesign primers
2412225GCTATGAACTAGTA-GCTATGAACTAGTA-GCTATGAACTAGTA-GCTATGAACTAGTADesign primers
2473967TCATTAACG-TCATTAACG-TCATTAACGDesign primers
2625330CATTTTAAAGAAG-CATTTTAAAGAAG-CATTTTAAAGAAG-CATTTTAAAGAAG-CATTTTAAAGAAG-CATTTTAAAGAAGDesign primers
2690022TGCTCA-TGCTCA-TGCTCA-TGCTCA-TGCTCA-TGCTCADesign primers
2764433GCTTAGA-GCTTAGA-GCTTAGA-GCTTAGA-GCTTAGA-GCTTAGA-GCTTAGADesign primers
2766013ATTTCCAGA-ATTTCCAGA-ATTTCCAGADesign primers
2798130CTAACTCTAAA-CTAACTCTAAA-CTAACTCTAAADesign primers
3015668TAAGGA-TAAGGA-TAAGGA-TAAGGA-TAAGGADesign primers
3193202TGAAATCAGAG-TGAAATCAGAG-TGAAATCAGAGDesign primers
3261856ATCCACTTTTGTGCC-ATCCACTTTTGTGCC-ATCCACTTTTGTGCCDesign primers
3284747GCGCTAAC-GCGCTAAC-GCGCTAACDesign primers
3438266AGATAG-AGATAG-AGATAG-AGATAGDesign primers
3491828ACGCAGGCA-ACGCAGGCA-ACGCAGGCA-ACGCAGGCA-ACGCAGGCA-ACGCAGGCA-ACGCAGGCA-ACGCAGGCA-ACGCAGGCA-ACGCAGGCA-ACGCAGGCA-ACGCAGGCA-ACGCAGGCA-ACGCAGGCA-ACGCAGGCA-ACGCAGGCA-ACGCAGGCA-ACGCAGGCA-ACGCAGGCA-ACGCAGGCA-ACGCAGGCA-ACGCAGGCA-ACGCAGGCA-ACGCAGGCA-ACGCAGGCA-ACGCAGGCA-ACGCAGGCA-ACGCAGGCA-ACGCAGGCA-ACGCAGGCA-ACGCAGGCA-ACGCAGGCA-ACGCAGGCA-ACGCAGGCA-ACGCAGGCA-ACGCAGGCA-ACGCAGGCA-ACGCAGGCA-ACGCAGGCA-ACGCAGGCA-ACGCAGGCA-ACGCAGGCADesign primers
3662797TGAGTAT-TGAGTAT-TGAGTAT-TGAGTAT-TGAGTAT-TGAGTAT-TGAGTAT-TGAGTATDesign primers
3688963AGCGATTTAG-AGCGATTTAG-AGCGATTTAGDesign primers
3758171TAAAAAA-TAAAAAA-TAAAAAA-TAAAAAA-TAAAAAADesign primers
3758207AAACAAT-AAACAAT-AAACAAT-AAACAAT-AAACAAT-AAACAAT-AAACAAT-AAACAAT-AAACAATDesign primers
3815595AGTCAT-AGTCAT-AGTCAT-AGTCAT-AGTCAT-AGTCAT-AGTCAT-AGTCAT-AGTCATDesign primers
4120967GCATTTA-GCATTTA-GCATTTA-GCATTTA-GCATTTA-GCATTTADesign primers
4215548GTTATCT-GTTATCT-GTTATCT-GTTATCT-GTTATCTDesign primers
4276032ATGCTAA-ATGCTAA-ATGCTAA-ATGCTAA-ATGCTAA-ATGCTAA-ATGCTAA-ATGCTAA-ATGCTAA-ATGCTAA-ATGCTAA-ATGCTAA-ATGCTAA-ATGCTAA-ATGCTAA-ATGCTAA-ATGCTAA-ATGCTAA-ATGCTAA-ATGCTAA-ATGCTAA-ATGCTAA-ATGCTAA-ATGCTAA-ATGCTAA-ATGCTAA-ATGCTAA-ATGCTAA-ATGCTAA-ATGCTAA-ATGCTAA-ATGCTAA-ATGCTAA-ATGCTAA-ATGCTAA-ATGCTAADesign primers
4838392CTTATG-CTTATG-CTTATG-CTTATG-CTTATG-CTTATGDesign primers
5142096GTTCCACCACCTGTACCT-GTTCCACCACCTGTACCT-GTTCCACCACCTGTACCTDesign primers
5142177CCTGTGCCAGTTCCACCA-CCTGTGCCAGTTCCACCA-CCTGTGCCAGTTCCACCADesign primers

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