Microsatellites /Tandem Repeats database

Genome: Jannaschia sp. CCS1

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
122984TCGCCCTCGCGCTCCCCCTCGCCTDesign primers
228809ACTGCTACAATTGCTACAACTGCTACADesign primers
233599AATGTAGCAAAAGTAGCAGATGTAGCADesign primers
361626TGGCCGAGGCCGTGCCCGTGACCGDesign primers
370242CGGGGCGGTGCGGGCCGTGGCGGTGDesign primers
730715CCG-TCG-CCG-TGG-CCG-CCG-CCG-CCGDesign primers
795303CCGGCGATTGAAGCCGATGATTGAAGCCAGTGATTGAAGDesign primers
904089TCGCCGACGCCGTCCCCGTCGACGDesign primers
1050331CCCTGATCGCGCTGATCGCGCTGATCGDesign primers
1382058TCGCCTACTTCGTCTACTACGCCTACTDesign primers
1424715CGTGGCGTGTCGTGCCGCGGCATGGDesign primers
1521774GTCAGTTTT-CACGGTTTT-CACGGTTTT-CACGGTTTT-CACGGTTTT-CACGGTTTTDesign primers
1559114TGCTGGCCGTGCTGACCGTGTTGGCCATGCTGCCCGTGTTGGCCATGCTGTCCGDesign primers
1604929CCGCAGCCCGTGCCACAACCCGTGCCGCAACCGGTGDesign primers
1605445CCGGTGCCTCAACCTGTCCCTCAACCGGTGCCCCAGDesign primers
1605502ACACCTGCACCGGCGCCA-GCACCTGCACCGGCGCCA-GCTCCTGCACCGGCGCCADesign primers
1610856GACCCCGATCCCGATCCCGACCCADesign primers
1610937CCGGATCCTGATCCGGACCCCGATDesign primers
1664496CGACGCATATTGGATGGCGCATATTGGATGGCGCATATTGGADesign primers
1758021GCTGCTGCCGAAGAAGCCGCTGCCGAAGCTGCTGCCGCCGCTGAADesign primers
1797086GGCGGCAACCAGCAGGGCGGAGGCGACCAGCAGGGTGGCGGCAACCAGGGTGGCDesign primers
1876183GCCGCCGCCCCCTCCGCCGCCGTCDesign primers
2045026ATCTGG-ATCTGG-AGCTGG-AACTGGDesign primers
2163345TAGGTTGC-AAGGTTGC-AAGGTTGCDesign primers
2200584CGCTGGTGCTGGAGCTGGCGCTGADesign primers
2253950CCCAATCTGCCTGATCCCAATTCGTCTGATCCCAATTCGTCTGATDesign primers
2533582CGGCCTCGGCCACGACCTCGGCATCGTCCTDesign primers
2569070GGAAGAGCTGCAAACCACCAACGAAGAACTGCAATCCATCAACGAAGAGATGCAATCCACGAADesign primers
2730481CCGGAG-CCGGAA-CCTGAG-CCTGAG-CCCGAGDesign primers
2865202GGTCCA-GGCCCA-GGCCCA-GGCCCADesign primers
2891150GTAGTGAACCCGTAGTGATACCGTAGTGATACCDesign primers
2900389GGCATCGGCTTCCGCATCGGCTTCDesign primers
3232392CAAGACCGC-CAAGACCGC-CAAGACCCCDesign primers
3477278GGCGGCGCGGGCGGCGGAGGCGGCGATGTCGGCGGAGGCGGCGATGTCGGCGGADesign primers
3477353GGCGGCAGCGGCGGCGCCGGCGGADesign primers
3527770GTGTCATTCCCCGCGTCATTCCCTGTGCCATCCCCCDesign primers
3547791AGTAACGCACCTTCGGTGCAACTG-CTCAACGCACCTTCGGTGCAACTG-CTCAACGCACCTGCGGTGCAACTG-CTCAACGCACCTGCGGTGCAACTGDesign primers
3548941GCAGCGCAGGGCAGAACAGCGCTGCDesign primers
3578623ATTTGCTGCACATTTTGCTACACAATTTGCTGCACADesign primers
3712786AACGCCCG-TGAGGCCG-TGAGGCCG-TGAGGCCG-TGAGGCCG-TGAGGCCG-TGAGGCCG-TGAGGCCG-TGAGGCCG-TGAGGCCG-TGAGGCCG-TGAGGCCG-TGAGGCCG-TGAGGCCG-TGAGGCCGDesign primers
3884145CGCCAGCGGCAGGGCCAGCGCAAGDesign primers
4029456TACGGAAAAACTACAGGAAAACTACGGATAAATDesign primers
4154692GGATGCGGACGCGGATGGGGAGGCDesign primers

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