Microsatellites /Tandem Repeats database

Genome: Bdellovibrio bacteriovorus HD100

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
36878GGCCGAAGAAGAGGATGAAGAAGAAGTCGAAGAAGADesign primers
61361TGAGGC-TCGGGC-TGGGGC-TGGGGC-TGGGGC-TGGGGC-TGDesign primers
61405TGGCTGTGGTTGTGGCTGTGGTTGTGGCTCDesign primers
135500CGGCGGCGCCGGTGGCGGCGGTGGDesign primers
254462TCA-TCA-TCG-TCG-TCG-TCG-TCG-TCG-TCA-TCA-TCT-TCG-TCT-TCA-TCG-TCC-TCA-TCDesign primers
441629CCAGCACCCGCACCAGCTCCGGCADesign primers
485071TTCCAAT-TTCCAAT-TTCTAAT-TTCTAAT-TTCTAAT-TTCDesign primers
731616GTGGATTTGGATGTGGGTATGGATDesign primers
784387ACCACGACCACAACAACGACAACGACCACGADesign primers
803768GATCCGGATCTGGATCCGGATCTGDesign primers
829125CTTC-GTTC-GTTC-GTTC-GTTC-GTTCDesign primers
829150TTCT-ATCT-ATCT-ATCT-ATCT-ATCT-ATCT-ATCTDesign primers
881443CTTCTGCAGCTTCTGCGGCTTCCGCAGCTDesign primers
929115CGATGGCGGCGGCTATGGCGGTGGTGACGGCGGCGGCDesign primers
979828GAAGAGCCTAAAAAAGAAGAACCGAAGAAAGAAGACCCTAAAAAAGADesign primers
992314GGCGGTCACAATGGTGGGCACAATGGCGGTGGCAATDesign primers
1264122AAAAAAGCAGCTCCAAAAGCAGCTAAAAAAGCGGCTDesign primers
1264163AGCAGCAGCTAAAAAAGCAGCAGCTCCAAAAAAAGCAGCAGCTCCTAAAAAAGCADesign primers
1336587CGGATC-CGGATC-TGGATC-CGGATGDesign primers
1625707TTGTT-TTGGT-GTTTT-GTTTT-TTTGTDesign primers
1693916ACTACTACTATTACTACTTCTACTDesign primers
1693941TTA-TTA-CTT-CTT-CTT-CTT-CTT-CTT-CTT-CTT-CTT-CTT-CTT-CTT-CTT-CTT-CTT-CTT-CTT-CTT-CTTDesign primers
1694005TATTTCAATTTCAATTTCTATTTCTATTTTTDesign primers
1733806CTGTTTCTTTTCCTGTTCCTTTTGCTGTTTTTCTTCDesign primers
1995972AGTCACCAGGGTCACCAGAATCACCAGDesign primers
2087040TGG-TGG-TGG-TGG-CGG-TGG-TGG-TGGDesign primers
2087109TGG-CGG-TGG-AGG-TGG-TGG-TGG-CGG-TGG-TGG-TGGDesign primers
2332450TCC-GCC-GCC-ACC-GCC-GCC-TCC-GCC-GCCDesign primers
2348187CCCGCCCCCGCACCCGTCCCCGCADesign primers
2760449GACGTTGCAGATAGTGACGGTGCAGGCAGTGACGTTGCAGATAGTGACGTTGCCGCTAATDesign primers
2845335CCGGTCGATGTATAA-CCAGTTGATGTATAA-CCAGTTGACGTATAA-CCGGTCGDesign primers
2845473TTGTGGCCG-TTATTTCCG-TTGTTTCCG-TTGTTTCCG-TTGTTTCCG-TTGTTTCCG-TTGTTTCCG-TTGTTTCCG-TTGTDesign primers
2845550TCCGTTGTT-CCCGTTGTT-CCCGTTATT-CCCGTTATT-TCCGTTATT-TCCGTTATT-TCCGTTGTT-TCCGTTGTTDesign primers
2845623CCGTTATTT-CCGTTATTT-CCGTTATTT-CCGTTATTT-CCGTTGTTT-CCGTTDesign primers
2845674TTCCCGTTA-TTTCCGTTA-TTTCCGTTA-TTCCCGTTG-TTCCCGTTG-TTCCCGTTA-TTCCCGTTA-TTCCCGTTA-TTCCCGTTA-TTCCCGTTA-TTCCCGTTA-TTTCCGTTA-TTTCCGTTA-TTCCCGTTA-TTCCCGTTA-TTCCCGTTA-TTTCCGTTA-TTDesign primers
2845866CCGTAATTA-CCGTTATTA-CCGTTGTTA-CCGTTATTA-CCGTTATTT-ACGTTATTA-CCGTTATTA-CCGTTATTT-ACGTTATTA-CCGTTATTA-CCGTDesign primers
2846079TTGCCATTGTTGCCATTATTACCGTTGTTACCATTATTGCCATTATTGCCGTTATTDesign primers
2963121GATGACGATGAAGACGACGAAGACDesign primers
3084735TTCAGATCCAGAGTCAGATTCAAADesign primers
3205166CTGGTTTGGGTTCTGATTTCGGTTCCGGTTTGGTTTCTGGTTTGGTCTCDesign primers
3328016GGCCCTGCCCCTGACCCTGGCTCTDesign primers
3491207TCTTTCACAGGATCTTTCACCGGATCCTTTACAGGADesign primers
3597878TCACTGTCT-TTACTGTCT-TTACTGTCT-TDesign primers
3606376TCGCCTTCGACTTCGTCTTCGCTTTDesign primers
3670620CAAAGAAAGCAGCTAAAAAAGCTACAAAAAAAGCAGTTAAAAAAACTACTAAAAAAGTAGCAAAAAAAGCTACAAAAAAAGTAGCTAAGAAAGCTACDesign primers

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