Microsatellites /Tandem Repeats database

Genome: Vibrio vulnificus YJ016

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
235165TGCAAGTGGAAGGGCAAGTGGAAGTGDesign primers
249365TCTAGAAA-ACTAGAAA-ACTAGAAA-ACTAGAAADesign primers
249398CTAGGAAA-CTAGGAAA-CTAGGAAA-CTAGGAAA-CTAGDesign primers
290962TTGTTGC-TAGACCC-TAGACCC-TAGACCC-TAGACCC-TAGACCC-TAGACCC-TAGACCC-TAGACCC-TDesign primers
298256CTCATCC-TAGAACC-TAGAACC-TAGAACC-TAGAACC-TAGAACC-TAGAACC-TAGAACC-TAGAACC-TAGAACC-TAGAACC-TAGAACC-TAGAACC-TAGAACC-TAGAACCDesign primers
335645ACACTTT-AGAACCT-AGAACCT-AGAACCT-AGAACCT-AGAACCT-AGAACCT-AGAACCT-AGAACCT-AGAACCT-AGAACCT-AGAACCT-AGAACCT-AGAACCT-AGAACCT-AGAACCT-AGAACCT-AGAACCT-AGAACCT-AGAACCT-AGAACCT-AGAACCT-AGAACCT-AGAACCT-ADesign primers
336903GAAAACT-AGACCCT-AGACCCT-AGACCCT-AGACCCT-AGACCCT-AGACCCT-AGACCCT-AGACCCTDesign primers
343153TTAGTACCA-GTAGTACCA-GTAGTACCADesign primers
349920TCCTAGA-ACCTAGA-ACCTAGA-ACCTAGA-ACCTAGADesign primers
382773TTAGTCC-CTAGTCC-CTAGTCC-CTAGTCC-CTAGTCC-TTDesign primers
397952CATTTTC-TCGCTTC-TCGCTTC-TCGCTTC-TCGCTTC-TCGCTTC-TCGCTTC-TCGCTTC-TCGCTTC-TCGCTTC-TCGCTTC-TCGCTTCDesign primers
414305CTCATGTCCGTGGTCATC-ATGATGTTCGTGGTCATC-ATGATGTTCGTGGTCATC-ATGATGTTCGTGGTCATCDesign primers
460217ATAATTGC-TAGTTTGC-TAGTTTGC-TAGTTTGC-TAGTTTGC-TAGTTTGC-TAGTTTGC-TAGTTTGC-TAGTTTGCDesign primers
460290AGTTTTCT-AGTTTTCT-AGTTTTCT-AGTTTTCT-AGTTTTCT-AGTTTTCT-AGTTTTCT-AGTTTTCT-AGTTTTCT-AGTTTTCT-AGTTTTCT-AGTDesign primers
543768CATCTTCGTCTTCATCTTCGTCTTCATCGTCDesign primers
589328TTGTTGATGTCCTTCGGGAGACTGACGTTGAAGTCCTTTGGGAGACTGACGTTGACGTCCTTCGGGAGACTGDesign primers
958817ATATCTAG-TTTGCTAG-TTTGCTAG-TTTGCTAG-TTTGCTAG-TTTGCTAGDesign primers
958866CCCTAGT-CCCTAGT-CCCTAGT-CCCTDesign primers
970164AAAGCGGC-AAAGCGGC-AAAGTGGC-AADesign primers
1046941TTTTCTC-GAACCTC-GAACCTC-GAACCTC-GAACCTC-GAACCTC-GAACCTC-GAACCTC-GAACCTC-GAACCTC-GAACCTC-GAACCTCDesign primers
1099732GGTGTTCCTACTATCGATTTTCCTGCTATCGGTTTCCCTACTATCDesign primers
1151131CTCTTGCT-AGTTTGCT-AGTTTGCT-AGTTTGCT-AGTTTGCT-AGTTTGCTDesign primers
1151180GTCCCTA-GTCCCTA-GTCCCTA-GTCCCTC-GTDesign primers
1162007AAAGAAC-CTAGAAC-CTAGAAC-CTAGAAC-CTAGAAC-CTAGAACDesign primers
1228249AGGGCAAGTGCAACGGCAAGTGCADesign primers
1367444TCCGATT-CTCGATT-CTCGATT-CTCGATT-CTCGATT-CTCGATTDesign primers
1383139GTTTTTA-GAACCTA-GAACCTA-GAACCTA-GAACCTA-GAACCTA-GAACCTA-GAACCTA-GAACCTA-GAACCTA-GAACCTA-GAACCTA-GDesign primers
1392007TTCATA-CTCATA-CTCATA-CTCATADesign primers
1964921TCTGAACCATTAGCATCTAAACAGTTAGCATCTAAACAGTTAGCATCDesign primers
1977290GGCTTCTGATGACAAATC-AGATTCTGATGACAAATC-AGATCCTGATGACAAATC-AGATACTGATGACAAATC-AGATTCTGATGACAAATC-AGATTCTGATGACAAATC-AGATTCTGATGACAAATC-AGATTCTGATGACAAATCDesign primers
2195401TCTTGAACGATCTTGACCCATTTTGAACGCDesign primers
2307450AAGTAGC-GAGAAGC-GAGAAGC-GAGAAGC-GAGAAGC-GAGAAGCDesign primers
2361194ACCACCGCCACCACTACCACCACCDesign primers
2363742TTTCGTT-TTTAGGT-TCTAGGT-TCTAGGT-TCTAGGT-TCTAGGT-TCTAGGT-TCTAGGT-TCTAGGT-TCTAGGT-TCTAGGT-TCTAGGT-TCTAGGT-TCTAGGT-TCTAGGT-TCTAGGT-TCTAGGT-TCTAGGT-TCTAGGT-TCTAGGT-TCTAGGT-TDesign primers
2366310CAC-CAC-CGC-CAC-CGC-CAC-CAC-CACDesign primers
2417253AAATGCGA-GGAAGCTA-GGAAGCTA-GGAAGCTA-GGAAGCTA-GGAAGCTA-GGAAGCTA-GGAAGCTA-GGAAGCTADesign primers
2417332AGGAAAAG-AGTAAAAG-AGTAAAAG-AGTAAAAG-AGTAAAAG-ADesign primers
2456211TCATCTTGGTCATCTAGGTCATCTTGADesign primers
2545706TGGATGTCGATGTGGCTGCGGATGTGDesign primers
2602458TCTAGAT-CCTAGAT-CCTAGAT-CCTAGAT-CCTAGATDesign primers
2748472TCAGCTTCACGTTTTGCGGCTTCTTCAGCTTCACGTTTCGCTTTTTCTTCAGCTTCACGTTTCGCTGCTTCTTCAGCTTCACGTTTCGCCGCTTCTTCGGCCGCACGTTTTGCTGCTTCTTCAGCTTCACGTTGCGCCGCTTCTTCAGCTTCGCGTTTTGCTTCGTCTTCDesign primers
2839662AGTATTAA-CGTTTTCT-AGTTTTCT-AGTTTTCT-AGTTTTCT-AGTTTTCT-AGTTTTCT-AGTTTTCT-AGTTTTCT-AGTTTTCT-AGTTTTCT-AGTTTTCT-AGTDesign primers
2988615AGAGAGG-AACTAGG-AGCTAGG-AGCTAGG-AACTAGA-AACTAGG-AACTAGG-AACTAGG-AACTAGG-AACTAGG-AACTAGG-AACTAGG-AACTAGG-AACTAGG-AACTAGG-AACTAGG-AACTAGG-AACTAGG-AACTAGG-AACTAGG-AACTAGG-ADesign primers
2988764CTAGGGG-CTAGGGG-CTAGGGG-CTAGGGG-CTAGGGG-CTAGGGTDesign primers
3060506GGAACTA-AGAACTA-GGAACTA-GAAACTA-GDesign primers
3060536AAACTAGA-AAACTAGA-AAACTAGA-AAACTAGA-ADesign primers
3100990GCCTTGG-GCCTCGC-ACCTCGC-ACCTCGC-ACCTCGC-ACCTCGC-ACCTCGC-ACCTCGC-ACCTCGC-ACCTCGC-ACCTCGC-ACCTCGC-ACCTCGC-ACCTCGC-ACCTCGC-ACCTCGC-ACCTCGC-ACCTCGC-ACCTCGC-ACCTCGC-ACCTCGC-ACCTCGC-ACCTCGC-ACCTCGC-ACCTCGC-ACCTCGC-ACCTCGCDesign primers
3140751TTCGCTTTGGCTTTCTCTTTCGCTTDesign primers
3186824CCACCCATACCGCCCATACCACCCATADesign primers
3212139ACCAACACCAAACCCAACAACAACDesign primers

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