Microsatellites /Tandem Repeats database

Genome: Bacillus amyloliquefaciens CC178

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
531203AGAAGCGAGAGCCAGAGCGGAAGAGGCAATAGCAAGAGCGGAAGAAGCAAGAGCCAGAGCAGCDesign primers
709325GGCGGCTAC-GGCGGCTAC-GGCGGCTTCDesign primers
761857ACTGGAGCTACAGGAGCTACAGGAGCTDesign primers
763310CAACAGGCC-CAACAGGCC-CAACAGGACDesign primers
763608GACAGGAGT-AACAGGAGT-AACAGGAGTDesign primers
764457TTCACCGGAGCAACGGGGTGCACCGGAGCAACGGGGCTGACCGGAGCAACAGGGDesign primers
764512TGACTGGAGCAACGGGATTTACTGGAGCAACGGGGTTTACCGGAGCAACGGGGTTTACCGGAGCAACGGGATTCACCGGAGCAACGGGCTDesign primers
837900AAAAAGTGAAAAAGAGAAAAACTGDesign primers
916974GCTGCTGCTGCTGCTGATTCTGCTGCTGTTDesign primers
1146968CTTCTTTTTCTTCTTTTTCTTCTCDesign primers
1226237TTATCTTTTTTTCTTTTTATCATTDesign primers
1301826TTCTTTATCTTTTTCCTTGTCTTTDesign primers
1316868GAAAACACTGCGATAACACTGTGAAAATGCTGCDesign primers
1356153AATAAAATAGTAAAATGATAAAATDesign primers
1644655AACAACAACAACAAAAACAAAAACDesign primers
1815900GCATTTTTTACATTTTTTGCATTTTCTDesign primers
1816039CCCATA-CCCATA-CCCATA-TCCATA-CCCATA-TCCATA-TCCATA-CTCATADesign primers
1825768GCAATGGCAGTGGGAATGGCAATTDesign primers
2044577ATATTTTGGTTATAATTTGATTACATTTTGATTDesign primers
2234820CAAATGCACAAATACACAAAAGCADesign primers
2260794TGTTTTTCTTTTTCTTTTCGTTTTDesign primers
2389877GTTTTTCTAGCATTTTCTAGGTTTTTCGACDesign primers
2606340GTGATGATGATGTGA-ACCATGATGATGTGA-ACCATGATGATGTGADesign primers
2773979GTTTCGCCTGTTTCGCATATTTCGCCTDesign primers
3085497TTATTATATAATGTTATATAACATTATATADesign primers
3622564GGGGAT-GGGGAT-GGGAAT-GGGAATDesign primers

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