Microsatellites /Tandem Repeats database

Genome: Beutenbergia cavernae DSM 12333

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
236755TCGTGGCCC-TCGTGGCCC-TCGTGGCCCDesign primers
397876GACCAGACG-GACCAGACG-GACCAGACGDesign primers
559532GCCTCCAGCTCC-GCCTCCAGCTCC-GCCTCCAGCTCCDesign primers
569050CGACCCCGGTGACCCGGG-CGACCCCGGTGACCCGGG-CGACCCCGGTGACCCGGGDesign primers
689546TGGTGC-TGGTGC-TGGTGC-TGGTGC-TGGTGC-TGGTGC-TGGTGCDesign primers
813706ACCGCGAGAGGAAGTCTGCGCG-ACCGCGAGAGGAAGTCTGCGCG-ACCGCGAGAGGAAGTCTGCGCG-ACCGCGAGAGGAAGTCTGCGCGDesign primers
920082GCGCAGAGTTCCTCTCGCGGTG-GCGCAGAGTTCCTCTCGCGGTG-GCGCAGAGTTCCTCTCGCGGTG-GCGCAGAGTTCCTCTCGCGGTG-GCGCAGAGTTCCTCTCGCGGTGDesign primers
948062CGACGCCGC-CGACGCCGC-CGACGCCGCDesign primers
1147168CGGCCACGT-CGGCCACGT-CGGCCACGTDesign primers
1159397CTCCGC-CTCCGC-CTCCGC-CTCCGC-CTCCGCDesign primers
1159428GCCTCC-GCCTCC-GCCTCC-GCCTCC-GCCTCCDesign primers
1277559GGCGCACGGATCCTCTCGCGGT-GGCGCACGGATCCTCTCGCGGT-GGCGCACGGATCCTCTCGCGGT-GGCGCACGGATCCTCTCGCGGTDesign primers
1293139GAACCTCTCGCGGTGGCGCACA-GAACCTCTCGCGGTGGCGCACA-GAACCTCTCGCGGTGGCGCACA-GAACCTCTCGCGGTGGCGCACADesign primers
1448245CGGGGGCCGGCGCCG-CGGGGGCCGGCGCCG-CGGGGGCCGGCGCCGDesign primers
1779603CAGGTCGGC-CAGGTCGGC-CAGGTCGGCDesign primers
1911445CGGCGCGG-CGGCGCGG-CGGCGCGGDesign primers
1939137CGCGAGAGGTTTTCTGCGCCAC-CGCGAGAGGTTTTCTGCGCCAC-CGCGAGAGGTTTTCTGCGCCAC-CGCGAGAGGTTTTCTGCGCCACDesign primers
1993109CTCTCGCGAAGGGGCCACGGAC-CTCTCGCGAAGGGGCCACGGAC-CTCTCGCGAAGGGGCCACGGACDesign primers
2009058CCGGAG-CCGGAG-CCGGAG-CCGGAGDesign primers
2009207GCCGGA-GCCGGA-GCCGGA-GCCGGADesign primers
2106523GCGCTCGCTG-GCGCTCGCTG-GCGCTCGCTGDesign primers
2223314CGAGAGGAAGTCTGCGTCACCG-CGAGAGGAAGTCTGCGTCACCG-CGAGAGGAAGTCTGCGTCACCGDesign primers
2254925CGCCGCGC-CGCCGCGC-CGCCGCGCDesign primers
2281009GGCCTCGGGCTCAGC-GGCCTCGGGCTCAGC-GGCCTCGGGCTCAGCDesign primers
2281073GCCTCGGGCTCAGCG-GCCTCGGGCTCAGCG-GCCTCGGGCTCAGCGDesign primers
2615525TGGGCGGCGAGGCCG-TGGGCGGCGAGGCCG-TGGGCGGCGAGGCCGDesign primers
2670622TCGTGGCGCCTCCGCGAGAGGC-TCGTGGCGCCTCCGCGAGAGGC-TCGTGGCGCCTCCGCGAGAGGC-TCGTGGCGCCTCCGCGAGAGGC-TCGTGGCGCCTCCGCGAGAGGC-TCGTGGCGCCTCCGCGAGAGGCDesign primers
3261109CGGGCCGGA-CGGGCCGGA-CGGGCCGGA-CGGGCCGGA-CGGGCCGGADesign primers
3300734CTGGGCCGCC-CTGGGCCGCC-CTGGGCCGCCDesign primers
3436618CCCGGGCAC-CCCGGGCAC-CCCGGGCACDesign primers
3436646CCGGACACC-CCGGACACC-CCGGACACC-CCGGACACCDesign primers
3944804CCGGGA-CCGGGA-CCGGGA-CCGGGA-CCGGGA-CCGGGA-CCGGGADesign primers
4057177CCGCTCACCCCTGGGGCGG-CCGCTCACCCCTGGGGCGG-CCGCTCACCCCTGGGGCGGDesign primers
4101158GCGGCGAGA-GCGGCGAGA-GCGGCGAGA-GCGGCGAGA-GCGGCGAGADesign primers
4101420TGCCTCGG-TGCCTCGG-TGCCTCGG-TGCCTCGG-TGCCTCGGDesign primers
4401907CGTCCGCGAGAGGATCCCTGCG-CGTCCGCGAGAGGATCCCTGCG-CGTCCGCGAGAGGATCCCTGCGDesign primers
4410818GCGTCG-GCGTCG-GCGTCG-GCGTCG-GCGTCGDesign primers
4439021CCCGCA-CCCGCA-CCCGCA-CCCGCADesign primers
4439051CCCGCA-CCCGCA-CCCGCA-CCCGCA-CCCGCADesign primers
4519620AACAGC-AACAGC-AACAGC-AACAGCDesign primers
4521713GTCAGGG-GTCAGGG-GTCAGGG-GTCAGGGDesign primers
4559791GCCGGT-GCCGGT-GCCGGT-GCCGGTDesign primers
4661620CACCGG-CACCGG-CACCGG-CACCGG-CACCGG-CACCGG-CACCGG-CACCGG-CACCGGDesign primers
4664740CGGGAGCAG-CGGGAGCAG-CGGGAGCAG-CGGGAGCAGDesign primers

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