Microsatellites /Tandem Repeats database

Genome: Sulfolobus islandicus M.16.27

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
102135TTTTACCATTTTTCCATTTGACCADesign primers
142881GGTGGAAGAAGATATGGAAGAAGAGGCGGAAGAAGADesign primers
213048AATAAAATTAAAAATATAAGTAAADesign primers
248802TTTTTATTTTAATTTTTGTTTTAADesign primers
347062AAAAGAAGAGAGAAGAAAAAAGAAGDesign primers
352749TAATATTATATAATATAATATGATATATTADesign primers
382119TGATATGAAATAGTATGAAATCATATGAAGDesign primers
432626AAG-ATG-AAG-AAG-AGG-ATG-AAG-AAGDesign primers
448513TAATCATGTAATTATGTAATTATGDesign primers
454363AATTAGAAGTAATTAAAAGTAAGGAGAAGTDesign primers
682634CCTAGCCCTATCCCTAGTCCTAGCDesign primers
717701TGAAAGGGTAAGAATGGGTAAGAAATGGTADesign primers
754551AAAAGAAAGGGAAAGAAGAGAAAGGDesign primers
791392TC-GT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TTDesign primers
868438AAGAGAAATTGAAAGAAATTTAGAGAGATTDesign primers
912551TTACTAAC-TTACTAAC-TTACAAACDesign primers
1144352CTCAAGCTCAAACTCAGGGTCAAGDesign primers
1180352ATAAAATAAGACAAAATAACATTAADesign primers
1208861CACCTATTAACAACTATTTACACCATTTAADesign primers
1239957TTTTAAAAATATTTATAAATTCTTATAAATDesign primers
1285606ATATCTCTTAATATTGCTTAATATGCCTTADesign primers
1485074TATAGTCATAGTTTTAGTGATAGTDesign primers
1654834TTATATTTAATTTTATTTCATTATATGTTADesign primers
1749274AATAGAATTAGAAAGAGAAGTAGADesign primers
1843921AAATAATGGAAATATTGGAAATAATGADesign primers
1925198CTTAAATCTTCTTCAGTCTTCTTTAACCTTDesign primers
1957965AAAGAAATTAAATGGAATTATAAGAAATTCDesign primers
2232939TAC-TAC-TAC-CAC-AAC-TAC-TAC-TACDesign primers
2248900GTA-GTA-GTA-GTT-GTG-GTA-GTA-GTADesign primers
2430896TTAGAAGTAATTAAAAATAATTAGCAGTTADesign primers
2454202CTTCTTCTTTTTCTTCTCCTCCTTDesign primers
2592436AAGAGG-AAGAGG-TAGAGG-AGGAGGDesign primers
2635456TATTTTTATTTCCATTTTTATTATDesign primers
2654876GAAAAAGAAGAACAAAAAGGAAAADesign primers
2663959TAAAAG-TAAAAG-TAAACG-AAAAAGDesign primers

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