Microsatellites /Tandem Repeats database

Genome: Pseudomonas syringae pv. syringae B728a

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
55035CGGCAGGCTTGGCCGCAGGTTTGGCGACAGGCTTGGDesign primers
64332CACCAG-CACCAG-AACCAG-CACCAGDesign primers
178549ATGCCACGC-CTGCCACGC-CTGCCACGCDesign primers
366101GCTCGCCATGCTGAGGCATTGACTCGCCAGGCTGATGAATTGACTCGCCATGCTGATGAATTGDesign primers
403729CCAAGCCGGAAGCTGCCAAGCCTGAGACTGCCAAGTCCGAAGCTGDesign primers
403809GCCAAGGCCGATGCAGGCAAAGCCGACGCATCCAAGGCTGAAGCADesign primers
510086CAGCAC-CAGCAC-CACCAG-CAGCAC-CGGDesign primers
575828CGGCAG-CAGCAG-GGGCAG-GGGCAG-GGGCAG-GGGCAG-GGGCAGDesign primers
608268TGCAAGCTACAAGCTGCAAGCTACAAGCTACAAGCDesign primers
608320AAAGGCT-TGAGGCT-TGAGGCT-TGAGGCT-TGAGGCT-TGAGGCTDesign primers
663331GCAAGCTGCAAGCCTCAAGCTACAAGCTDesign primers
838604TGCGAA-CGCGAA-CGCGAA-CGCGAADesign primers
878539CCGGCACCGGCCCCAGCACCGTCADesign primers
893813GCGGTT-GCCGTT-GCCGTT-GCCGTTDesign primers
1106395TCTGCTCGG-CCTGCTCGG-CCTGCTCGGDesign primers
1178010TGCTGGGGCTGGGGCTGGTGATGGDesign primers
1199559CCAGGCGCAGGCGCAGGCCCAGGTDesign primers
1295347CACGATCACGGTCACGACCATGATDesign primers
1314321CTGGATGTCCGGATGTCCGGATGTDesign primers
1453318GTGATCGCTGATGATGTGATCGATTATGATGTGATCGCGGAGCATDesign primers
1456227CTTGCAG-CTTGCAG-CTTCCAG-CTTGCAGDesign primers
1599560AGGCTGCTGATGAGGCCAAGAAAAAGGCCGCAGAAGACGCCAAGAAAAAGGCTGCCGAGGACGCGAAGAAAADesign primers
1683443GGCATGGACCATTCTCAGATGCAGGGCATGGATCATTCCAAAATGCAGGGTATGGACCATAGCCAGATGCAGDesign primers
1801517TAGCTTC-AAGCTTC-AAGCTTC-AAGCTTCDesign primers
1866150CCGAGC-CTGAGC-CTGAGC-CTGAGC-CTGAGC-CCGAGCDesign primers
1894351GATCGAGTTCGAGATCTACATCGADesign primers
2202199GATCAAGC-CATCAAGC-CATCAAGCDesign primers
2288621CGGAGCT-GGGAGCT-GGGAGCT-GGGAGCT-GGGAGCTDesign primers
2288657CAAGCTA-CAAGCTA-CAAGCTA-CAAGCTA-CAAGCTA-CAAGCTA-CAAGCTA-CAAGCTA-CAAGCTTDesign primers
2288738CTCTTGC-TTGCAGC-TTGCAGC-TTGCAGC-TTGCAGC-TTGCAGC-TTGCAGC-TTGCAGC-TTGCAGCDesign primers
2314950AGATCAA-AGCTTGT-AGCTTGT-AGCTTGT-AGCTTGT-AGCTTGT-AGCTTGT-AGCTTGT-AGCTTGTDesign primers
2332806CCTGCCGCGGCACCTGCTTCGGCACCCGCCGCTGCADesign primers
2371871GGTCTT-GATCTT-GATCTT-GATCTTDesign primers
2423173AGACAAG-CTACAAG-CTACAAG-CTACAAG-CTACAAG-CTACAAGDesign primers
2423235ACTTGAA-GCTTGAA-GCTTGAA-GCTTGAADesign primers
2658138TTTCAAGATCAAATGAGGCTTCAAGATCAAATAACGTTTCAAGATCAAACCCGGDesign primers
2694637AGTCGT-AACCGT-AACCGT-AACCGT-AACCGT-AACCGTDesign primers
2758922CACCGCAATCAGCGCAATCACCGCAAADesign primers
2884905GTG-GTG-CTG-GTG-GTG-ATG-GTG-GTGDesign primers
2901098CAGGTTCTGGTTCTGGTTCTGGTTCAGGCTDesign primers
3227071CTT-GTT-GTT-CTT-GTT-CTT-GTT-CTT-GTT-CTT-GTT-CTTDesign primers
3386817CCTTGCCCGGATTTTTTTCCGACCTTGATCGGATTTTTTTCCGAGGTAGCTCGGATTTTTTTCCGADesign primers
3409751GCATCAGA-CAATCAGC-CAATCAGA-CAATCAGA-CAATCAGC-CAATCAGC-CAATCAGC-CAATCAGCDesign primers
3632758ATGG-TCGG-TCGG-TCGG-TCGG-TCGG-TCGG-TCGG-TCGGDesign primers
3663496GCTGGCCGCGCCCCTGCTGATCGTGCCCCTGCTTGCCGCGCAGCTDesign primers
3685147ACTCATCAG-CCTCATCAG-CCTCATCAG-CCTCATCAGDesign primers
3943765CCTGCGCCTGCTGCTGCGCCTGGGDesign primers
4021011GCAACTCA-TCAACTCA-TCAACTCADesign primers
4118928TCGGGTTCCGGTTCAGGTTCGGGCDesign primers
4255794CGCAAGC-CGCAAGC-CGCAAGC-CGCAAGCDesign primers
4255823TGAAGCT-TGAAGCT-TGAAGCT-TGAAGCT-TGCAGCTDesign primers
4380537AGCTTCA-AGCTTCA-AGCTGCA-AGCTGCADesign primers
4380607CTTACAGCTTGCAGCTTATAGCTTATAGDesign primers
4415413CGGCGTCAA-CGGCGTCAA-CGACGTCAADesign primers
4472340GATCCTGGTGATCCTGCTGATTCTGGTDesign primers
4910917AAGCTAT-AAGCTGC-AAGCTGC-AAGCTGC-AAGCTGC-AAGCTGCDesign primers
4910982AGCTTGCGGCTTGCAGCTTGAAACTTGCDesign primers
5055501GTAGCTG-GAAGCTA-CAAGCTA-CAAGCTA-CAAGCTA-CAAGCTA-CAAGCTA-CAAGCTA-CAAGCTADesign primers
5063286CCTGTCAGT-TCTGTCAGT-TCTGTCAGT-TCTGTCAGT-TCTGTCAGTDesign primers
5269324GCAGCTT-CAAGCTT-CAAGCTT-CAAGCTT-CAAGCTT-CAAGCTTDesign primers
5302380TAGCTTC-AAGCTTC-AAGCTTC-AAGCTTC-AAGCTTCDesign primers
5378874TCACAAACACAAACACAAACACAADesign primers
5433213CGGCTAC-AAGCTGC-AAGCTGC-AAGCTGC-AAGCTGC-AAGCTGC-AAGCTGC-AAGCTGC-AAGCTAC-AAGCTAC-AAGCTAC-AAGCTAC-AAGCTAC-AAGCTAC-AAGCTACDesign primers
5469621GCTGCAA-GCTGCAA-GCTGCAA-GCTGCAADesign primers
5469650CAGAAG-CAGAAG-CAGAAG-CAGAAGDesign primers
5469685GCTTGAAGCTTGCAGCTTGTAGCTTGCADesign primers
5627452ACTGGC-TCTGGC-TCTGGC-TCTGGC-TCTGGCDesign primers
5782523GAGGCG-GACGCG-GACGCG-GACGCGDesign primers
5840947CGACTTCCGGGG-TGACTTCCGGGG-TGGCTTCCGGGG-CGACTTCCGGGGDesign primers
5883391GGA-GGA-AGA-GGA-AGA-GGA-GGA-AGADesign primers
6036188CTGGTGCTGATGCCGGTGCTGGGGDesign primers

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