Microsatellites /Tandem Repeats database

Genome: Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
203CAC-CAC-CAC-CAT-TAC-CAC-CAT-CAC-CADesign primers
62744TTT-TAA-TTA-ATT-TAA-TTA-TTT-TTA-TTADesign primers
180324CATGATGGTAATCATCATGATGGTCGTCGTCATGGTGGTGATGATCDesign primers
193826GGCGAGATGGATCATGGCAACATGGATCACAGCGGGATGAATCATGGCGDesign primers
240897CGGCGGTAACGGCGGCAACGGCGGTCADesign primers
426232TGCTATCGCTATTACTATTGCGATDesign primers
550697GCGAAAGAGAAAGCGGAAGCGGAADesign primers
705778TGGTGGTGGTCGTGGTGCTGGCGGTDesign primers
1117750GCGGCAGCCGCATCGGCAGCCGCAGCGDesign primers
1117981GCGGCAGCCGCATCGGCAGCCGCAGCGDesign primers
1141994CCGGAG-CCGGAG-CCGGTG-CCGGAG-CDesign primers
1215985ACGAAAAATAACCAGAAATAACAAAAAATADesign primers
1311313TACGGTCA-TGCGGTCA-TGCGGTCA-TDesign primers
1346755GCGGCAGCCGCATCGGCAGCCGCAGCGDesign primers
1346986GCGGCAGCCGCATCGGCAGCCGCAGCGDesign primers
1711304GCCAGCAAGCCAGTAAGCCAGTAAGCDesign primers
2014905AAAAGCA-ATAAGCA-ATAAGCA-ATAAGCADesign primers
2365775GCAGCGCCA-GCAGCGCCA-GCGGCGCCADesign primers
2586830ACGCCGTCGCACGCCGCCTCACGCAGTTGCDesign primers
3143433AAC-CAC-CAT-CAC-CAT-CAC-CAT-CAC-CAT-CAC-CAT-CAC-CAT-CAC-CAT-CACDesign primers
3143482ACCACG-ACCACG-ACCACG-ACCACG-ACCACG-ACCACG-ACCACG-ACCACG-ACCADesign primers
3425232TCGCTT-TCGCTT-TCTCTT-CCGCTTDesign primers
3425999TCGCCGCCGTCGCCGCCATCACCGCCGTCDesign primers
3620242TTATCCGGCCTTTATCCCGCCTTTATCCCGCGTTDesign primers
3675745ATGCAGACGCAGATGCAAACGCAGDesign primers
3763569CACCAG-CACCAG-CGCCAG-CAGCAGDesign primers
4144981ACG-ATG-ACG-ACG-ACG-AAG-ACG-ACG-ADesign primers
4183282TCATTATAATTAACATTATCAATATCADesign primers
4234625CCA-CTG-CTG-CTG-CTG-CTG-CTG-CTG-CTG-CTG-CTG-CTG-CDesign primers
4273751CGCGGTAAATCTCGATAAATGGCGGTAAAACGDesign primers

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