Microsatellites /Tandem Repeats database

Genome: Shigella flexneri 2a str 301

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
71453GCAGCAACAGCAGCAGCGCCAGCADesign primers
156372TCACCC-TCACCC-TAACCC-TCTCCC-TCADesign primers
329581AACAAACAACAATCAATAAACAATAAACADesign primers
580036TCTGCGGCAGCTTTTGCTGCAGCGGCTTTTTCAGCTGCTGCTTTTDesign primers
586356TAATTAACTTATAATTATATTATAATTAACTCADesign primers
632049ACGCCGCC-ACTCCGCC-ACTCCGCC-ACDesign primers
1045738ATTGGGATTGTGATTGGCATTGCGDesign primers
1578395ACCTTGTTACCTAGTTACCTTTTTDesign primers
2000231CCA-CCA-GCA-CCA-CCA-GCA-GCA-CCA-CCDesign primers
2014553GGTCGCT-GGTTGCT-GGTTGCT-GGTDesign primers
2227436ATGTCGACGAACTTCGACGAATTTCGCCGADesign primers
2334168TTATATGCCTTTATTTGCTTTTTTATGCCADesign primers
2455981ACGGAACAGATCGGAACGAATCGGAADesign primers
2657381CAGCG-CCACG-CAGCG-CAGCG-CAGCG-CAGCG-CAGCG-CDesign primers
2816646CGCCCA-GCCCCA-GCCCCA-GCCCCA-GCCCCA-GCCCCA-GCCCCA-GCCCCADesign primers
2880786CAAGGTAAACATCGACCAGATAAAGATCGACCAGATAAAGATCGACDesign primers
2903193GTTGTGATGTTGTGTTGTTGTGTTDesign primers
2923012ATC-ATC-ACC-ATC-AGC-ACC-ATC-AGC-ACC-ATC-AGC-ACC-ATC-AGC-ACC-ATCDesign primers
2924604ACGCCGTTGCAGGACGTTGCAGGACGTTGCADesign primers
3080922AA-AA-CA-AC-AG-AA-AA-AA-AA-AA-AA-AA-AA-AA-AA-AA-AA-AA-AA-AA-AA-AA-AA-AA-ADesign primers
3106835TAAGTTAAT-GATTTTAAT-GATTTTAAT-GATTTTAAT-GATTTTAAT-GATTTTAAT-GATTTTAAT-GATTTTAAT-GATTTTAAT-GATTTTAAT-GATTTTAAT-GATTTTAATDesign primers
3147524CCTTTGCTTTCTTTTCCTTGCGTTTDesign primers
3416395GTCAGTGATGCTGTCAA-TCAAGTGATGCTGTCAA-TCAAGTGATGCTGTCAADesign primers
3461448GGAGAAAGA-GCAGAAAGA-GCAGAAAGA-GDesign primers
3466178TT-TT-TG-TT-TT-AT-TT-TT-TG-TT-TT-TA-TT-TT-TTDesign primers
3753626CCCTCACCCTAACCCTCTCCCTCADesign primers
3820125GCAGCAGCATCAGCAGCGCCAGCADesign primers
3883517CACCAA-TACCAA-TACCAA-TACCAADesign primers
3996251TTGCGGTGCAGGTGCAGGTGCAGGTGCAGGTGCAGGTGCAGGTGCAGGTGCAGGTTDesign primers
4113846AATGCCAATGGCGATGCCAATTCCDesign primers
4119888ACCAACATCAACACCAGCACCAGCDesign primers
4169563CGCGGTAAATCTCGATAAATGGCGGTAATTDesign primers
4411019CCTGCGAGTTATTTAACTCCTGCGAATTATTTAACTTCTGTGAATTATTTAACTCCTGCGAATCATTTAACTCCTGDesign primers
4476255ATGGGCGGCATGGGTGGCATGGGCGGCATGDesign primers

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