Microsatellites /Tandem Repeats database

Genome: Fusobacterium nucleatum subsp. nucleatum ATCC 25586

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
16040TAAAATAAATTATAATAATATAAAADesign primers
49950TT-TT-TT-TA-TA-TT-TA-TT-TA-TA-TA-TT-TT-TC-TA-TTDesign primers
126607ACAAAAGCAAAAACAAATACAATAADesign primers
230469AAAAATATC-ATAAATATC-ATAAATATC-AADesign primers
231303ATATAAAAATATAAAGTTATAAAAADesign primers
240767ACTTTTTCTTTTACTTCTTCTTTTADesign primers
244344TTATTTTTTAATAATTTTTTCACTATTTTTTATDesign primers
254346TCAATATTTTCTATATTTTCATTATTTDesign primers
255329AATAATTTTTAAAATTTTTTAAGAATTTTTDesign primers
278529TTTTATTGTATTTAATTTTTTTATADesign primers
299585TGAATTAGAATTTGAACTTGACTTDesign primers
299706TGA-TCA-TCA-TCA-TTA-TCA-TCA-TCADesign primers
335053TT-CT-AT-TT-TT-TC-AT-AT-TT-TT-CT-CT-AT-CT-TT-TTDesign primers
362283TTTTCTAACATATGCTAACATATTCTAACADesign primers
382990CT-TT-TT-CT-CT-TT-CT-CT-TT-CT-TT-TT-CT-TT-CTDesign primers
471781TT-TT-TT-AT-TA-TT-TA-TT-TT-TT-AT-TT-TDesign primers
532032TTT-TTT-TAT-TTT-TTT-TCA-ATT-TTT-TTA-TTA-TTT-TTTDesign primers
536202TTTTTATTTTATTTTTTTATTTCTTDesign primers
537338TTGCTCTTTCTCTTGCTCTTTCTCDesign primers
547468TTTCGCTTTAGCTTTTGCTTTAGCTDesign primers
591837TGCTCCTGCTACTGCCCCTGCTACDesign primers
602527ATTAAA-ACTAAA-ATTAAA-ATAAAA-ADesign primers
607283ATAATTATATATTATAATATATAACTATCTDesign primers
611714TGAAAGATATGAAAGACATGAAGGATATDesign primers
623344TA-TA-TT-TT-TC-TA-TT-TT-TA-TA-TT-TT-TDesign primers
682118TT-TT-CT-TT-TT-CA-TT-CT-CT-CT-TT-CT-TT-TT-TTDesign primers
721255AA-AA-AT-AA-AA-AA-AC-AA-AA-AA-TA-AA-AA-AT-AA-AA-AA-ADesign primers
755534ATTTTAAAATATTTTAACTTTTTTTAAAAADesign primers
766938TGATGATGATAATGATGATGATCADesign primers
796874AAATTTTTTTAAAAATTTTTAAACTTTTTTADesign primers
814173TTTAGTTCTAGTTTTACTTTTAGGDesign primers
817086AAAATGTCTCTCGAAATGTCCCTCGAAATGTCCCTCGAAATGTCCCTCAAAADesign primers
825506AAACAAATTTAAACTCATTTGAAGAAATTTDesign primers
826217AAATTTA-AAAATTA-AAAATTA-AAADesign primers
826402AGTAGCAGCAGCTCCAGTTGAAGCAGCTCCAGCAGCAACAGCTACDesign primers
846858TTTTTCTTTTCTTTTTTTTCTTCTTTDesign primers
890895ATAAAAATAAAGATAATAAAAAAAADesign primers
915873TTTAATATATATTAATAGATTTTAACATTTDesign primers
936453AATTTTAATATTATTTTTAATATTADesign primers
954719GCAGCAGCTGCAGCAGTAGCAACADesign primers
1021501AAATGATAAAAATCATAAAAATCATAAAADesign primers
1045308AAAAATAAAAAAAATAAAATAATAADesign primers
1045394TAAAAATAGATAAAAAAAAATAAAAATATTDesign primers
1058991AA-AA-AA-TA-AA-AG-AA-AA-AA-AT-AA-AA-ADesign primers
1101186TTCTTTTTTATTATTTTATAGTATTTTTTATTTTTTTTCADesign primers
1119095AAATAAAATGAAATTAATTAAAATADesign primers
1132933AAAAAAAATAAAAAAAAAGAACAAADesign primers
1192269TTTTTTAATTTTTTCATTTTTCAADesign primers
1194914AAGAATTTTTTAGAACTTTTAAAAAATTTTADesign primers
1209111TA-TT-TA-TT-TT-TA-TA-TT-TA-TA-TT-TTDesign primers
1354046AA-AA-AA-AA-TA-AA-AT-AT-AA-AA-AA-TA-AA-GA-AA-ADesign primers
1362057TA-AT-AT-AA-AT-AT-AT-TA-AA-AA-TA-TA-AT-AT-AA-GT-AT-AT-TA-TA-AA-TA-TADesign primers
1382291AAAAGAAGAAAGAAAAAAGAGAAAATAADesign primers
1435040TTCCTTTAACTTTTCTTTTAAATTTTCTTTTAAATTDesign primers
1446577ATTAAAAAAATAAAAAATTAAAAAADesign primers
1463917TCTTTT-TCTTTT-TCTGTT-TCCTTT-TDesign primers
1489823TCTTCATCTTCTTCTGCATCATCATDesign primers
1490165CAAAAGATAATGAAATAAATTATAATGAAATAAAAAATATTGAAADesign primers
1491695ACTACTCAAGAA-ACTACCAAAGAA-ACTACCAAAGAA-ACTACDesign primers
1535733TTTCTATAATTTCCATAATTTCTAAAATDesign primers
1542912TTTTTTTTTTATATTTTTTATTTTDesign primers
1551093TATTTTTTATTTTGCATTTTTTAATTTTTDesign primers
1557316ATAATAATAAAAATAATTTTAATAATAATGADesign primers
1584873AGAAAAAATAGAAAATATTGAAAAAATAGAAAAATTDesign primers
1623552TATTTTTATCGG-TCATTTTATCGG-TCATTTTATCGG-TDesign primers
1653862AAATTTAAAAATTTAGAAATTAAADesign primers
1660447GTTATAATTATAGTAATATTTATADesign primers
1704511AATATGAATATAAAGATGAAAATGDesign primers
1704973TCTATTTTTCTTTTTTTCAATTTTTCTDesign primers
1728637TTGTAATTTCAATTGTAGTTCCAATTTTAATTCCAATTDesign primers
1733654AGATAT-AAATAT-AAATAT-ACATATDesign primers
1743933TGTAGAAAAATTGAAAAAAAATTGAAAAAAAATDesign primers
1774050TTAATTTTTTAATTTCTTTATTTTTTDesign primers
1804111AATTTTAATTTAATTTTTAAATTTDesign primers
1814797TAAAAGAAAATGAAATAATATATAADesign primers
1814830AAAAAAAGAATAAAAAAATAGAAAADesign primers
1823211GAAGCTGAAGCAGCAGCTAAAGCTGADesign primers
1848454ATTTATATATATTTTTATAGTTATDesign primers
1855550ATTTTTAAACTTTTCTAAACATTTTTATATADesign primers
1915047AATTTTATAATTTTTTAATTTTATDesign primers
1987067ATATTTTTTATATTCTTTATATTTTTCADesign primers
2022322TATATATTTTTTTATTTTTTTAAACATTTTDesign primers
2026070AAAAGAAAAAATAAGAAATGAAATGDesign primers
2095598CTTGGTGTACTTGGTATACTTGGTGTTCDesign primers
2095658CCACCTCCTCCTCCGCCTCCACCACDesign primers
2129057AGTTGGTGCACTTGGTGCTGTTGGTGCACTTGGTGCADesign primers

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