Microsatellites /Tandem Repeats database

Genome: Treponema denticola ATCC 35405

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
32589TTTGATTTTTTAATTTTTCGATTTDesign primers
171405TTTTTCTTTTTTTTCTTTGTATTTTTTDesign primers
253661ATAAAATTTTTTAAAATTATATAGAATCTTDesign primers
261616TTATTTTTATCTATTTTTTTTAATTTTGATDesign primers
333309TACTATAAATATACTATATTTATAGTATAAATADesign primers
408489TTTTTATTTTCATCTTTATTTTTTDesign primers
411764TTTTCGTGCATTTTCGTAGATTTTCGTGAATTTTDesign primers
552352GTTTGATTCAAATTAATTTTATTCAAATTGATTTGAATAAAATTADesign primers
599870TTTTAGC-AACAAGC-AACAAGC-AACAAGC-AACAAGC-AACAAGC-AACAAGC-AACAAGC-AACAAGCDesign primers
604798AATGGGTAATGGCTAGTGGGTAATGGGTAATDesign primers
609789GCCTAGAAAAGCAAAGAAAACACTAGAAAAGDesign primers
616970TT-TT-GT-TT-TT-GC-TT-TT-AT-TT-TT-AT-TTDesign primers
617301ATTTTTTTTGTTTTTTTTATTGTTTTTDesign primers
650084AAAATTCG-CAGCTTCG-CAGCTTCG-CAGCTTCG-CAGCTTCG-CAGCTTCGDesign primers
669792TATTTTATTTTTATTATTTTTTTATTTTGTTCTTDesign primers
688206TTTTAAATTTTTTTATTTTTTTTTACATTTTTDesign primers
721272TTTTTTAAAATTTTATAAACTTTTTTTTAADesign primers
728154ACTAT-ATAAT-ATAAT-ATAAT-ATAAT-ATAAT-ADesign primers
778537CCTCAGCT-GCGAGGCT-GCGAGGCT-GCGAGGCT-GCGAGGCT-GCGAGGCT-GCGAGGCT-GCGAGGCT-GCGAGGCTDesign primers
817099GTAAA-GAAAA-GAAAA-GAAAA-GAAAA-GDesign primers
1000280AAATTCGC-AGCCTCGC-AGCCTCGC-AGCCTCGC-AGCCTCGC-AGCCTCGC-AGCCTCGC-AGCCTCGC-ADesign primers
1071161TT-TT-TT-GT-TT-TT-CT-TT-TT-TA-TT-TT-TT-TT-GTDesign primers
1100774ATAAAAAAAATAAAAACAAAATAAAAAAAATATDesign primers
1144448TTTTTAGTTTTTTTGTTTTTTCGTDesign primers
1195101TC-TG-TT-TC-TC-TC-TC-TG-TC-TC-TC-TA-TC-TC-TCDesign primers
1199886TACATTTTTTACAATTTTTACAATTTTTADesign primers
1219418GCCTAGAAAAGCAAAGAAAACACTAGAAAAGDesign primers
1254955TT-TT-TT-TT-AT-TG-TT-TT-TT-TA-TT-TA-TDesign primers
1298052ATTAAAAGTAAAATTACAAATAAAADesign primers
1309187AAACTAATACTAAAATTAAAATTADesign primers
1387199AGATTATCTTGATAATTGATTATTTTGATAATCGGTTGTCTTGATAATDesign primers
1422130TGATAGAATATGATAGAAGATGATGAAATADesign primers
1422621CCATCACGA-TCATCACGA-TCATCACGADesign primers
1481464GATAGACA-AACAGACA-AACAGACA-AACAGACA-AAGAGACA-AAGAGACA-AAGAGACA-AAGAGACADesign primers
1528850AAAATGATATAGAATGTTATATACTGATATAAADesign primers
1565760TTTTTGTTTTATTTTTTGTTCTTTTTTTCTDesign primers
1621010TTTTTTTTTAATTTTGTTTTTTATTTTDesign primers
1769527AA-AC-AA-AG-AA-AA-AC-CA-AG-AG-AA-AA-AT-AG-AA-AA-ADesign primers
1787097TTTATTT-TTAATTT-TTAATTT-TTAATTTDesign primers
1835745TATTTAATTATATTTACTTTTATTTTATCADesign primers
1864505TATTTAATTATATTTACTTTTATTTTATCADesign primers
1884686ATATTATATTTTATATAATATATADesign primers
1940326AAAGAAA-TAAGAAA-TAAGAAA-AAADesign primers
1942587GGATGCGGAGGCGGCTGCGGATGCGGDesign primers
1949550ATTATTAATTATACTTTATTAATTATACATTATTAATTAAGCDesign primers
1969867AATATTTTGATAAAATTATGATAAGATTATGATADesign primers
2002304ATTACAATTATAATTATAAGTACADesign primers
2053006TTTTTTTTGTTTTATGTTTTTTTATDesign primers
2067641AGCAAAAAAAAGAAAAAACAAGCGAAACAADesign primers
2098461GATTTCGATGATGACTTTGATGATGATTTTGACGATDesign primers
2269655CC-TA-TA-TA-TA-TA-TA-TA-TA-TA-TA-TA-TA-TA-TADesign primers
2278224TGCTTTTTTAGGTTCTATTTTTTTGGGTTCCGCCTTTTTAGGTACTDesign primers
2297668CGCTTTG-TTGCTTG-TTGCTTG-TTGCTTG-TTGCTTG-TTGCTTG-TTGCTTG-TTGCTTG-TTGCTTG-TTGCTTG-TTGCTTG-TTGCTTGDesign primers
2302218TTATCTATAACTTATCTACAACTTATCTTTACCDesign primers
2338425TTTTTTTTATCTTTTTTTATTATTTTTDesign primers
2349118AGTACAGCCGGCGGAGCTTCAAGGCGTACAGCCGGCAAAGCTTCGAGGCGTACAGCCAGCGGAGCTTCAAGGDesign primers
2353257TTTTTCTCTTTTTCTATTTTACTCDesign primers
2635336TATTTAAATATTTCAAAATTTAAATDesign primers
2655933GCATAAAAATGCAATAAAATGAATAAAAATDesign primers
2681903TTAAAGATTACT-CAAAAGATTACT-CAAAAGATTACTDesign primers
2707057TA-TT-TT-TT-AT-TT-AT-AA-TT-TT-TT-CT-TT-TTDesign primers
2788822TTTTAGC-AACAAGC-AACAAGC-AACAAGC-AACAAGC-AACAAGC-AACAAGC-AACAAGC-AACAAGC-AACAAGC-AACAAGC-AACAAGC-AACAAGC-AACAAGC-AACAAGC-AACAAGC-AACAAGC-AACAAGCDesign primers
2789998GCAGTCTACCAGCATAATGGTGGACACCCTACCGGCATAATGGTGGGCAGTCTACCAGCATAATGGTAGDesign primers
2798321TTTGAATATTATCTAAATATTATCTAAATATTATDesign primers

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