Microsatellites /Tandem Repeats database

Genome: Lactobacillus casei W56

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
250194GCAGCCACCTGTTCAGCAGCCGCTTGTTCTGCTGCAGCCTGTTCADesign primers
277382AGCCAAGCACCTGCAAGTCAGGCACCTGCGAGTCAAGCAGCCGCADesign primers
358059ATCATGTTGCTTTATGTTGCTTTATGTTGCDesign primers
362120AATCCGACTAACCCGACTAACCCGACTDesign primers
557505TTATTTAGCTTTCTTTAGGTTATTTTAGCTDesign primers
595932AGCTTCATT-AGCTTCATT-AACTTCATTDesign primers
982887GCAATGGCAACGGAAATGGCAATGDesign primers
1166526ATCATCATCGTCGTCATCATCATGDesign primers
1258558AAATAGTAGGCAACACAGTAGGCAACCTAGTAGGCADesign primers
2121427AGCACTACTTGAAGC-TGCACTACTTGAAGC-TGCACTGCTTGAGGCDesign primers
2168343TAACCA-TAACCA-TAGCCA-TAACCGDesign primers
2331424ATAACATCACTACC-CTAACATCACTACC-CTAACATCACTGCCDesign primers
2790886GATTGAGATTCAGATTGAGATTCADesign primers
3041856ATTGATAATCAATGATAACCAATGACAATCDesign primers
3060325CAGTTG-CAGTTG-CAGTAG-CAGGTGDesign primers

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