Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Brachyspira pilosicoli B2904

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
1348	TATTTTATTCTATTGTATATTATAT	Design primers
25488	TATTCAATAATATTAAACAATATTCATTAA	Design primers
41434	ATTTTATTGTATTTGATTATTTTTT	Design primers
50696	TAATAAAATATAATTTTATATATTA	Design primers
51562	TTTTTATTTTTTTTGTTTTTTTATTTTATTTATTT	Design primers
71510	AAAATAAAGATAAAAATGAAAATA	Design primers
111824	ATAT-GAAA-CAAA-CAAA-CAAA-CAAA-CAAA-CAAA-CAAA-CAAA-CAAA-CAAA-CAAA-CAAA-CAAA-CAAA-CAAA-CAAA-CAAA-CAAA-CAAA-CAAA-CAAA-CAAA-CAAA	Design primers
150383	AGAGAT-AGAGAT-AGAGTT-AGAGAA	Design primers
155222	CAAAAGTAAAAGCAGAAGGAAAAG	Design primers
167530	GCTGTATTATTATTTGTATTATTATATGTATTATTA	Design primers
170212	TACACCAAAAGAACAATTTACACCATCAGAACCATTTACACCAAAAGAACGATT	Design primers
179313	TTTAT-TATAT-TATAT-TATAT-TATAT	Design primers
190528	TGCTGCTGCTGTTACTGCTGCTGC	Design primers
222030	TATAA-ATCGC-ATCGC-ATCGC-ATCGC-ATCGC-ATCGC-ATCGC-ATCGC-ATCGC-ATCGC-ATCGC-ATCGC-ATCGC-ATCGC	Design primers
224773	TTAATTTTATTTTTAATTTTAGTT	Design primers
231561	ATAAAAATGAAAATAATAATAAAT	Design primers
251200	TCGAAATCATCATCATCGAAGTCATCATCATCAAAGTCATCGTCA	Design primers
251260	TCTAAATCATCATCATCGAAGTCATCATCATCAAAGTCTTCATCA	Design primers
251317	TCATCATCTAAATCTTCATCATCGTCATAATCTTCATCATCATCTAAATCATCG	Design primers
251392	TCA-TCA-TCA-TCA-TAA-TCA-TCT-TCA-TCA-TCA	Design primers
255980	ATAATATTATCAAAATATTACCAAAATATTATC	Design primers
268309	TTTTTTTTAGTTTTTTTGTACTCTTTTTTTATT	Design primers
279517	ATTAGTG-TAGACTG-TAGACTG-TAGACTG-TAGACTG-TAGACTG-TAGACTG-TAGACTG-TAGACTG-TAGACTG-TAGACTG-TAGACTG-TAGACTG-TAGACTG-TAGACTG	Design primers
287251	TA-TT-TT-TA-TG-TT-TT-TA-TA-TT-TT-TT	Design primers
315691	TATTATTAATATTAATATTATAAT	Design primers
319829	TA-AA-TA-AC-AA-AA-AA-TA-AA-AA-TA-AA-TA-AA-AA	Design primers
343321	AATAA-GATAA-AATAA-AAAAA-TATAA	Design primers
353537	GAAT-TATT-GTTT-GTTT-GTTT-GTTT-GTTT-GTTT-GTTT-GTTT-GTTT-GTTT-GTTT-GTTT-GTTT-GTTT-GTTT-GTTT-GTTT-GTTT-GTTT-GTTT-GTTT-GTTT-GTTT-GTTT-GTTT-GTTT-GTTT-GTTT	Design primers
355284	TTTTATTATTTTTTATAATTTTGTATTCTT	Design primers
362225	TTATATTGTTGTATATTATTTTATATTATT	Design primers
367587	AT-TT-AT-AT-TT-TT-GT-TT-AT-AT-TT-TT	Design primers
371761	TTAGTCTTTTTAAGTATTTTTTAGCATTTT	Design primers
377383	TTATTATTTTTTTAATTATTTTATTTATTGTTTTTA	Design primers
392406	GTATTTTCTATATTTTCTGTGTTTTCT	Design primers
433803	TTATTTATATTTTTATTAATATTT	Design primers
434442	TGT-TCT-TGT-TGT-TGT-TCT-TGT-TGT	Design primers
445766	TAATTTTAGTTTTACTTTTAATTA	Design primers
449402	ATAAAAAATTAAAAAATATTATAGAAAATG	Design primers
450181	AAAGAAGCTAAAAAAGCTTTAAAAGAAGAAAAGAAAGCTCTAAAAAAAGAGAAGAAAGCTTTA	Design primers
468792	TTTTGCTTTGTTTTTATTTGTTTTA	Design primers
481163	TTTTCTATACCTTTTTCTATACCCTCTTTTATACCT	Design primers
481975	ATATATTATAATATTATTTAATAAA	Design primers
485584	TT-TT-AA-AT-TT-TT-TT-AT-AA-TT-TT-TT-AT-TT-TT	Design primers
495878	TT-TA-AT-AT-TT-TT-TA-AA-TT-TT-TT-TT-AT-TT-TT	Design primers
521888	TTTTTTTATTTTTATTTTTATTTTA	Design primers
541585	TTAAC-AAGAC-AAGAC-AAGAC-AAGAC-AAGAC-AAGAC-AAGAC-AAGAC	Design primers
562633	TTTTA-ATTAG-TGTTG-TGTTG-TGTTG-TGTTG-TGTTG-TGTTG-TGTTG-TGTTG-TGTTG-TGTTG-TGTTG-TGTTG-TGTTG-TGTTG-TGTTG-TGTTG-TGTTG-TGTTG	Design primers
591121	AATACTAATTAGTAATAATTATTAATAATT	Design primers
591401	AGAATAATTTAGAATCTTTTAGAATAGTTA	Design primers
597574	ATAAAATAGAATATAATAGAATAAT	Design primers
639394	AAAAAATAATAAAATAAAAAAAGA	Design primers
646741	TATAAAAAATAATAAAGAATTAAAAAAGAT	Design primers
680545	AATAATTTTAATAAATTTAAAAATTTT	Design primers
702888	TACTATCATTACTGTCATTACTATAAT	Design primers
708227	AAATAAAATTAAAGAAAAAAGAATA	Design primers
721320	AATAAAAATATAAATAATAATAAA	Design primers
727801	ATAATAACAATAATTATAATAAAA	Design primers
744929	AAAAATTATTCTTTAAAAATCATTCTTTAAAAAATATTATTT	Design primers
745121	TATATAATAA-AATATAATAA-ATTATAATAA	Design primers
750722	TATTAATTATATTATTATTTGTATTATTAATTATAT	Design primers
750898	TTATTAGTATTATTATTTTTATTA	Design primers
750990	TAATTCTTCATTTTCTAACTTTTCATTATCTAATTTTTTATTTTC	Design primers
751404	TTTTATGATTTTTTGTAATTTTTTATGATT	Design primers
771759	ATAAAAAATTTTAAAATTAAAAATTAAAAATTTAAAAATTTAAAA	Design primers
790087	TAT-TTA-TTT-TTT-ATT-AAT-TAT-TAT-TTT-T	Design primers
803453	AAAAATAAAATTCAAAATAAAATT	Design primers
817051	ATATATATAAATATTAATAAATATTCATAA	Design primers
846561	ATATTAATAATAATATTGATAATA	Design primers
873279	AATAATATAATAAAATGATAATAT	Design primers
876391	GACAA-TATAA-TATAA-TATAA-TATAA-TATAA	Design primers
890662	TATTTTTATAATTTTATATTATTA	Design primers
907659	ATTATTGTAAATTTATTGTAAAATATTTGTAAA	Design primers
923748	TTATGATTTTGAATATGATAATGA	Design primers
935160	ATATTAAATTATATAATATAATACT	Design primers
941564	AAAATCAAAGTAAGTCAAAGTAAATTAAAG	Design primers
943836	GATTAAAATATTAAAAGATTAAAG	Design primers
947380	GCTGAAGAAAAAGTTGAAGAAAAGGCAGAAGAGAAAGCCGAAGAAAAA	Design primers
967659	ATATA-TGACA-CAACA-CAACA-CAACA-CAACA-CAACA-CAACA-CAACA-CAACA-CAACA-CAACA-CAACA-CAACA-CAACA	Design primers
968908	TAAATTAATTTACATTAAATTAAAA	Design primers
977457	ATCAGA-ATCAGA-ATTAGA-ACCAGA	Design primers
1014614	ATTAGTTATTATAACTTATTATTATTTTTT	Design primers
1029744	TA-TT-TT-TA-TA-TT-TA-TT-TC-TG-TT-TT	Design primers
1056955	AAAATTAAAAGTAAAATCAAAAAT	Design primers
1059487	TATAATGTAATAAAAAATAATATAG	Design primers
1068455	GGATATGGGTATTGATATTGATAT	Design primers
1075150	AATATAAAATATATAAAAAATATAGAA	Design primers
1108742	TATCATCATCATTAGCATTGTCATTATAAT	Design primers
1122388	TTTTTATTTATATTATTATTTTTT	Design primers
1164390	TTATTACTAATGAGATGGTTACTAATGATATGATTACTAATAATA	Design primers
1177683	TTACTTACTTAATTACTTACTTAA	Design primers
1177757	ACATCTCCAAAATCTCCAATATCTCCAACATATCCAATATCTCCA	Design primers
1185882	GTATCTGTTGTTTCTGTTGTATTTGTT	Design primers
1191380	TTTTTTTTCTTTATTATTTTTATTT	Design primers
1215724	TTTAATAAATTTTTAAAAATTTTAATAAGG	Design primers
1225268	TGTTTTTTTATACTTTTTTATGTTATTTAA	Design primers
1287716	AT-AA-AG-AA-AT-AA-AA-AA-AT-AA-AT-AA	Design primers
1318104	TATT-AAAG-CAAG-CAAG-CAAG-CAAG-CAAG-CAAG-CAAG-CAAG-CAAG-CAAG-CAAG-CAAG-CAAG-CAAG-CAAG-CAAG-CAAG-CAAG	Design primers
1320993	AAATT-CAGAC-CAGAC-CAGAC-CAGAC-CAGAC-CAGAC-CAGAC-CAGAC-CAGAC-CAGAC-CAGAC	Design primers
1322037	TTACC-AGATC-AGATC-AGATC-AGATC-AGATC-AGATC-AGATC-AGATC	Design primers
1324665	ATAAA-TTCAG-ACCAG-ACCAG-ACCAG-ACCAG-ACCAG-ACCAG-ACCAG-ACCAG-ACCAG-ACCAG-ACCAG-ACCAG-ACCAG	Design primers
1327274	TTAAA-GTCAG-ATCAG-ATCAG-ATCAG-ATCAG-ATCAG-ATCAG-ATCAG-ATCAG-ATCAG-ATCAG	Design primers
1328712	TAAGA-CCAGA-CCAGA-CCAGA-CCAGA-CCAGA	Design primers
1329978	AAATT-CAGAC-CAGAC-CAGAC-CAGAC-CAGAC-CAGAC-CAGAC-CAGAC-CAGAC-CAGAC-CAGAC	Design primers
1332189	TAAAG-ACCAG-ACCAG-ACCAG-ACCAG-ACCAG-ACCAG-ACCAG-ACCAG	Design primers
1333663	TTTATATGTATATTTAAATTTATT	Design primers
1344243	TAT-TAT-TTT-TAT-TAT-TAT-TAT-TAT-TAT-TAT	Design primers
1344488	ATA-TTA-TTA-TTA-TTA-TTA-TTA-TTA	Design primers
1344964	GTA-TTA-TTA-TTA-TTA-TTA-TTA-TTA	Design primers
1372452	AT-AT-AT-AT-AA-AT-AA-AT-AT-AT-AG-AT	Design primers
1376388	TTAGAAT-TTTGCTG-TTTGCTG-TTTGCTG-TTTGCTG-TTTGCTG-TTTGCTG-TTTGCTG-TTTGCTG	Design primers
1383110	TTTTATTATTTTTTTATTTTATTG	Design primers
1400845	ATATAAAAATACAAAAAAATAAAA	Design primers
1429689	AAATATAATAATATAAAATTAAATA	Design primers
1495126	AATAGAAAAAACAGAAAAAATAGAAAA	Design primers
1543458	ATTATTGTTTTGATTGTTATTTTCTTGATTATCATTATTTTGATT	Design primers
1543506	TTGATTATTGTTTTGATTATCTTGATTATTCTGATTATTATCTTGGTTATTATTTTGATTGTT	Design primers
1546825	TTTTT-ATATT-TTATT-TTATT-TTATT-CTATT	Design primers
1555251	TGTTGTGTTTGTATCAGTTGTATTTGTAACTGTTTCGTTTGTATC	Design primers
1617119	TTT-TAT-TAT-TAT-TTT-TTT-TAT-TAT	Design primers
1625778	TA-AA-AA-TA-AA-AG-CA-AA-AA-TA-GA-AA	Design primers
1630454	TT-TT-TT-TG-TT-TT-CT-TT-TG-TT-TC-TT-T	Design primers
1659788	AA-AA-AC-AA-AA-AA-GA-AA-AA-AA-TA-AA-A	Design primers
1686847	TTTATTGTTTTTATATTCTTTTTTTATAGTCTT	Design primers
1735085	AGTTT-AGTGC-GGTGC-GGTGC-GGTGC-GGTGC-GGTGC-GGTGC-GGTGC-GGTGC-GGTGC-GGTGC	Design primers
1742997	ATTATAAAAATTAGAAAAATTATCAAA	Design primers
1780423	TTTTGCTATTTTGCAATTTTGTTA	Design primers
1806356	AATGTATTTTATAAAAAATATAATATATAAAAAATATAATATATAAAA	Design primers
1819922	ATTTTTTTATAATTTTTTTTAGATTTTTAT	Design primers
1871400	TTATA-TTTTA-TTTTA-ATATA-TTATA	Design primers
1896864	AAATATAATAATATATTATAAACTATAAAA	Design primers
1917449	TTTTATATTTTATTATGTTTATTTATATTT	Design primers
1921509	TTAAAATTAACATTAAATTTTAAA	Design primers
1923476	TTATAGTATTATAATATTATAATA	Design primers
1928661	TT-TT-TT-TT-AT-AT-TT-TT-TT-AT-GT-TT-T	Design primers
1942515	TA-AA-AA-AT-TA-AA-AA-AT-AT-TA-TA-AA-TA-AA-TA	Design primers
1949610	TTTTTATTATTATCTTTAGTTTTA	Design primers
1956747	ATGAC-TACAC-TACAC-TACAC-TACAC-TACAC-TACAC-TACAC-TACAC	Design primers
1963638	ATACTCTTCATCAAAATCATCTTCTTCAAAAAACTCTTCATCATT	Design primers
1964333	CAATAAAATAATAAAAAAATAAAA	Design primers
1970308	AAATATAAATAAATAAATAAATAAATAAATAAATAA	Design primers
1971933	AAT-TAT-TAT-TAT-TAT-TAT-TAT-TAT-TAT-TAT	Design primers
1974553	ATTAATATCAATATTAAAATTAGT	Design primers
1990680	TAAAGTCATTAGTAACAAAATCATTAGTATTAATTTCATTAGTCA	Design primers
1991020	ATTAGTTATAATATCATTTGTAATAATATTATTAGTAATGATTTC	Design primers
2007962	ATATATCAAAATGCAACATGCCTATGTCGCAAAATGCAACATGCCTATGTCGCAAAATGCAACATACCT	Design primers
2008032	TGTCGCAAAATGTAACATACCTA-TGTCGCAAAATGTAACATACCTA-TGTCGCAAAATGCAACATGCCTA-TGTCGCAAAATGCAACATACCTA-TGTCGCAAAATGTAACATACCTA-TGTCGCAAAATGTAACATACCTA	Design primers
2013063	TTACTTTTTCTTTAACTTCTACTT	Design primers
2029772	TC-TT-TA-CT-TT-CC-TT-TT-CT-AT-TT-TT-TT-AT-TT	Design primers
2031063	AAAATATAAGCAAATATAAGGAATTATAAG	Design primers
2066599	TT-AT-TT-TT-TT-AT-AT-TT-TT-TT-AT-AT-T	Design primers
2071607	TATAAATATATATTTAAAAATAAA	Design primers
2079647	CC-AA-AT-AA-AC-TA-AA-TA-AA-AC-AA-AT-AA-A	Design primers
2115956	TAATAATAACAATATTAATAATAA	Design primers
2120109	ATTTTTTAAGAAATTTTTTATTAAATTTTTTATTAA	Design primers
2127969	TA-AA-AT-AT-TA-TT-TA-TA-TA-TT-AT-TA-AA-AT-AT-AA-A	Design primers
2181809	AGAAGAGGAAGAAGAAGTAAAAGA	Design primers
2222322	AT-TT-TT-AC-TT-TT-AA-TT-TT-AT-CT-TT	Design primers
2224444	AA-AA-AT-AT-AA-TA-AT-AT-AA-AA-AT-AT	Design primers
2281483	ATCATTATTAATTATCATTAATTATTATTT	Design primers
2288826	TGTATATTTATATATAGTTAAGTATATTTT	Design primers
2289462	AT-TT-TT-AT-TT-GT-AT-AT-TT-AT-TT-AT	Design primers
2294490	TTTTCTTTTTGTTCTTCTTTTTGT	Design primers
2305096	ATAAAAAAATAAAAATATAAAACA	Design primers
2309992	AAACC-GCACC-GCACC-GCACC-GCACC-GCACC	Design primers
2346998	AAATAATAATAATAATAATAATAATAATAAAAGTAA	Design primers
2355608	TATAAATATTAATATAGATATTAA	Design primers
2356318	ATAAAAAAATAAAATAATAAATAA	Design primers
2375097	CATTTTCTTTTTCAGTTTCATTTG	Design primers
2384384	ACAAA-GAAGA-AAATA-AAATA-GAAGA-AAACA-AAATA-GAAGA-AAATA	Design primers
2394121	TTTTAATTTTTTATTTATTTAATT	Design primers
2394797	AAAAATTTAACAAAATATAAAAAAACTCAA	Design primers
2408418	ATAAAAAAGATATAAATAATATAGAAAAAATAT	Design primers
2424097	CTATTTTTTATTATTATTTAATATTTTTTA	Design primers
2425202	GCCATACCCATAGCTATAGCAATA	Design primers
2425913	TAATTTTAAATTTAACTTTAATCT	Design primers
2453754	TTTTTTATCTTTCTTATCTTTTTTAGC	Design primers
2454949	ATTTTTCTGAAAAATTTCTGAAAATTTTCTGAA	Design primers
2459757	GAAAAGAAGAGAAATAAAAATAAAA	Design primers
2464003	GGTTATGGTAGAGGATATGGCAGAGGTTATGGTATG	Design primers
2464151	TAAAATAATAAAAAATAAAATAAATAAAAA	Design primers
2464297	TATGGTGCAGGATATGGTAGAGGATATGGTAGAGGA	Design primers
2504220	TAAA-TTTG-TTTG-TTTG-TTTG-TTTG-TTTG-TTTG-TTTG-TTTG-TTTG-TTTG	Design primers
2519498	CAACTTTTTTCTCGATTTTTTTCTCAACTTTTTTAG	Design primers
2521665	CATAATTA-AATAATTA-AATAATTA	Design primers
2533481	AAAAAATAATAAATAATTATAAAAATTAAA	Design primers
2562588	TTTATCTTTTTCTTTATTTTCATC	Design primers
2563876	TTTATATACATTTTTATACTTTTCTATAAA	Design primers
2585741	ATATAAATAAAAATATTAATATAA	Design primers
2626360	TTTTTAAATTATTAAATTTTTTAA	Design primers
2641913	ATTTAAATTTTAATTTCAATATAA	Design primers
2649596	TAT-AAT-AAT-AAT-AAT-AAT-AAT-AAT	Design primers
2673961	TAATTATAATTTTTATTATAAATA	Design primers
2681276	TTTTTATATTTGTTTATAATTTTTTCTATG	Design primers
2686415	AGAAATAAAAAGAAATAATTAAAAATAATA	Design primers
2719879	TAGTTTCAGAAGTTTCAGTATTTTCAG	Design primers
2721037	TTTTTAATTAACTTTAAATTAATGTTTATTTAA	Design primers
2745516	TTTTATTTATATTATTATATTTAT	Design primers
2753604	ATTTTATATTTTTTTACTTTGTTTT	Design primers
2753648	TTTTTATAGTTTTATAATTTTATA	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

1348

TATTTTATTCTATTGTATATTATAT