Microsatellites /Tandem Repeats database

Genome: Shigella sonnei 53G

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
56139CTGGCGGTGGCGCTGTCGATGGCGDesign primers
175027TCACCC-TCACCC-TAACCC-TCTCCCDesign primers
252148GT-AT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TT-TTDesign primers
261167TGCTCT-GACTCT-GACTCT-GACTCT-GACTCT-GACTCTDesign primers
278742TAACCCGGT-GAACCCGGT-GAACCCGGTDesign primers
651464AAAGAGATAAACAGATAAACAGATDesign primers
745097AGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGDesign primers
745178AAAAAGCGGCAGCGGCAAAAGCAGCAGCTGAAAAAGCCGCTGCAGDesign primers
777666CCAGAG-GAAGAG-GAAGAG-GAAGAG-GAAGAG-GAAGAGDesign primers
830697ATTTGCCAGATCTGCCAGATCTGCCAGDesign primers
1079694ATTGGGATTGTGATTGGCATTGCGDesign primers
1476011AATACA-ATAACA-ATAACA-ATAACA-ATAACA-ATAACADesign primers
1573182AAAATTGTGCAAATTTGTGCACTATTGTGCDesign primers
1744558TCTTTATCTGTATCTTTATCTGTADesign primers
2103015ACCTTGTTACCTAGTTACCTTTTTDesign primers
2368998ATGTCGACGAACTTCGACGAATTTCGCCGADesign primers
2477840TTATATGCCTTTATTTGCTTTTTTATGCCADesign primers
2610278ACGGAACAGATCGGAACGAATCGGADesign primers
3201878ATGGGGAA-TTGGGGAA-TTGGGGAADesign primers
3245228GTTGTGATGTTGTGTTGTTGTGTTDesign primers
3462417CCTTTGCTTTCTTTTCCTTGCGTTTDesign primers
3595478TCGTCCA-TTCAACA-TTCAACA-TTCAACA-TTCAACA-TTCAACA-TTCAACA-TTCAACA-TTCAACA-TTCAACA-TTCAACA-TTCAACA-TTCAACA-TTCAACA-TTCAACADesign primers
3792783TT-TT-TG-TT-TT-AT-TT-TT-TG-TT-TT-TA-TT-TT-TTDesign primers
4038369GTCGGTTTACGCTTAC-CTCCGTTAACGCTTAC-CTCCGTTAACGCTTAC-CTCCGTTAACGCTTAC-CTCCGTTAACGCTTACDesign primers
4121328TGAGGGAGAGGGTTAGGGTGAGGGDesign primers
4317209TTGCGG-TGCAGG-TGCAGG-TGCAGG-TGCAGG-TGCAGG-TGCAGG-TGCAGG-TGCAGGDesign primers
4323808GATGATA-GAAAGCA-GAAAGCA-GAAAGCA-GAAAGCA-GAAAGCA-GAAAGCA-GAAAGCA-GAAAGCA-GAAAGCA-GAAAGCA-GAAAGCADesign primers
4435803AATGCCAATGGCGATGCCAATTCCDesign primers
4648810AAAAGAAATCTTTAGCATAAGAAAAATCTTTGGCATAAGAAAAATCTTTGGCATDesign primers
4699025CCCTCACCCTAACCCTCTCCCTCADesign primers
4755285ATGGGCGGCATGGGTGGCATGGGCGGCDesign primers
4779438CCGCCACCGCCTCCTCCACCGCCCDesign primers
4822894ACCAAAGTGCTATGCAG-TAAAAAGTGCTATGCAG-TAAAAAGTGCTATGCAGDesign primers
4967388AAGCGGCGAAAGCGGTGAAAGCGGCAADesign primers

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