Microsatellites /Tandem Repeats database

Genome: Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
95177TAATGT-AAATGT-TATTGT-TATTGT-TATTGTDesign primers
158901GAAACAGAAAAAACAGAAGAAAAAGAADesign primers
208146AAACAAAATTAAAAAATATTAAACAAATATDesign primers
214406AA-AA-TA-AA-CA-AA-AA-AA-AT-CA-AA-AA-AA-TA-CADesign primers
281131TTTGATGAAATTAGTTGAAAGTGGATGAAADesign primers
323183GGCGGA-GGCGGA-GGTGGA-GGCGGADesign primers
484740ATAATAAAAAATAAACAAAAATGATAATAADesign primers
500958TTTGATTTTATTTGATGTTGTTTGATTAGADesign primers
723309AAGAAAAAGGGAAGAAAGAGGAAAGAAAATGAGDesign primers
900244TTCAAGTTCTTCAAGCTCATCAAGTTCDesign primers
955801TATTAGGATATTAAGAGATTAGGADesign primers
1411272GTAACTTCTGTTGATGATGAACTTTCTGTTGATGATGAACTTTCTGTTGATGATDesign primers
1484072AGTTCA-AGTTCA-AGCTCA-AGTTCADesign primers
1489125ACCACGTCC-ACCACGTCC-ACCACGTGCDesign primers
1987309ATAGTTTTTTATTGGTTTTTATTATTTTTTDesign primers
2052018TTTTT-AGGCT-CTGCT-CTGCT-CTGCT-CTGCT-CTGCT-CTGCT-CTGCT-CTGCT-CTGCT-CTGCT-CTGCT-CTGCT-CTGCT-CTGCT-CTGCT-CTGCT-CTGCT-CTGCTDesign primers
2231198AACTA-TCTGC-TCTGC-TCTGC-TCTGC-TCTGC-TCTGC-TCTGC-TCTGC-TCTGC-TCTGC-TCTGC-TCTGC-TCTGC-TCTGC-TCTGC-TCTGC-TCTGC-TCTGC-TCTGC-TCTGC-TCTGC-TCTGC-TCTGC-TCTGC-TCTGC-TCTGC-TCTGC-TCTGC-TCTGCDesign primers
2263642CAAGACCAAGTCCAAAACCAAAACDesign primers
2352992TAGTTTTTTTCAATTTTTTTACGTTTTTTTDesign primers

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