Microsatellites /Tandem Repeats database

Genome: Xanthomonas oryzae pv. oryzae MAFF 311018

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
160792GGGATTC-GGGATTC-GGGATTC-GGGATTC-GGGATTC-GGGATTC-GGGATTC-GGGATTC-GGGATTC-GGGATTC-GGGATTC-GGGATTC-GGGATTCDesign primers
324482ACGCACA-ACGCACA-ACGCACA-ACGCACA-ACGCACA-ACGCACA-ACGCACA-ACGCACA-ACGCACA-ACGCACA-ACGCACA-ACGCACA-ACGCACA-ACGCACA-ACGCACA-ACGCACADesign primers
375244ATGACC-ATGACC-ATGACC-ATGACCDesign primers
581451GCCGT-GCCGT-GCCGT-GCCGT-GCCGTDesign primers
664559CTGCCTG-CTGCCTG-CTGCCTG-CTGCCTGDesign primers
698123CCAGCCACAAGC-CCAGCCACAAGC-CCAGCCACAAGCDesign primers
849964CGATTCC-CGATTCC-CGATTCC-CGATTCC-CGATTCCDesign primers
888234CGATTCC-CGATTCC-CGATTCC-CGATTCCDesign primers
958668CCGTGGCA-CCGTGGCA-CCGTGGCADesign primers
1024899AATCGTC-AATCGTC-AATCGTC-AATCGTCDesign primers
1258369AGCTACACGCCA-AGCTACACGCCA-AGCTACACGCCADesign primers
1315975CGATAC-CGATAC-CGATAC-CGATACDesign primers
1322684ATTCGGG-ATTCGGG-ATTCGGG-ATTCGGG-ATTCGGG-ATTCGGG-ATTCGGG-ATTCGGGDesign primers
1409408AATCGGG-AATCGGG-AATCGGG-AATCGGG-AATCGGG-AATCGGG-AATCGGG-AATCGGG-AATCGGG-AATCGGG-AATCGGG-AATCGGG-AATCGGGDesign primers
1510449CATGACCGG-CATGACCGG-CATGACCGGDesign primers
1514566CATGACCGG-CATGACCGG-CATGACCGGDesign primers
1549093CAGGG-CAGGG-CAGGG-CAGGG-CAGGG-CAGGG-CAGGG-CAGGG-CAGGG-CAGGG-CAGGG-CAGGG-CAGGG-CAGGG-CAGGG-CAGGGDesign primers
1680067CGATTCC-CGATTCC-CGATTCC-CGATTCC-CGATTCC-CGATTCC-CGATTCC-CGATTCC-CGATTCC-CGATTCC-CGATTCC-CGATTCC-CGATTCCDesign primers
1783452CCGAATC-CCGAATC-CCGAATC-CCGAATC-CCGAATC-CCGAATC-CCGAATC-CCGAATC-CCGAATCDesign primers
1833084TCGGCATCGT-TCGGCATCGT-TCGGCATCGTDesign primers
2143374GCTGCG-GCTGCG-GCTGCG-GCTGCGDesign primers
2212321GCGCCACC-GCGCCACC-GCGCCACCDesign primers
2360582ATCTCG-ATCTCG-ATCTCG-ATCTCG-ATCTCGDesign primers
2583623ACATCG-ACATCG-ACATCG-ACATCGDesign primers
2616055CCAATCC-CCAATCC-CCAATCC-CCAATCC-CCAATCC-CCAATCCDesign primers
2622140GCGGTAA-GCGGTAA-GCGGTAA-GCGGTAA-GCGGTAADesign primers
2743655GGCTGTGC-GGCTGTGC-GGCTGTGC-GGCTGTGCDesign primers
2763806GGGAATC-GGGAATC-GGGAATC-GGGAATCDesign primers
2938642TCCAGCCGGCCGGGG-TCCAGCCGGCCGGGG-TCCAGCCGGCCGGGGDesign primers
3054884CATGCAGCG-CATGCAGCG-CATGCAGCGDesign primers
3158721GGCGGTA-GGCGGTA-GGCGGTA-GGCGGTA-GGCGGTADesign primers
3158770GGCGGAT-GGCGGAT-GGCGGAT-GGCGGAT-GGCGGATDesign primers
3158827GCGGATG-GCGGATG-GCGGATG-GCGGATG-GCGGATG-GCGGATG-GCGGATG-GCGGATGDesign primers
3302362GTCGGT-GTCGGT-GTCGGT-GTCGGTDesign primers
3312102GGCAGT-GGCAGT-GGCAGT-GGCAGTDesign primers
3496284ATTCGGG-ATTCGGG-ATTCGGG-ATTCGGG-ATTCGGGDesign primers
3515499GGGAGTT-GGGAGTT-GGGAGTT-GGGAGTT-GGGAGTTDesign primers
3592471GGCCG-GGCCG-GGCCG-GGCCG-GGCCGDesign primers
3889677CACCGC-CACCGC-CACCGC-CACCGCDesign primers
3973008TGCGTGTTG-TGCGTGTTG-TGCGTGTTGDesign primers
3973094AGCG-AGCG-AGCG-AGCG-AGCG-AGCGDesign primers
4074286CGGGAGT-CGGGAGT-CGGGAGT-CGGGAGTDesign primers
4119069CGGCGGTCGTCA-CGGCGGTCGTCA-CGGCGGTCGTCA-CGGCGGTCGTCADesign primers
4166734ATGTCG-ATGTCG-ATGTCG-ATGTCGDesign primers
4285547ACCGAC-ACCGAC-ACCGAC-ACCGAC-ACCGAC-ACCGAC-ACCGACDesign primers
4285602CCAACG-CCAACG-CCAACG-CCAACGDesign primers
4356797CTGAGC-CTGAGC-CTGAGC-CTGAGC-CTGAGC-CTGAGC-CTGAGC-CTGAGCDesign primers
4356861GCGG-GCGG-GCGG-GCGG-GCGG-GCGG-GCGGDesign primers
4430152GGCGACT-GGCGACT-GGCGACT-GGCGACTDesign primers
4536536GCCGGT-GCCGGT-GCCGGT-GCCGGT-GCCGGT-GCCGGTDesign primers
4790132GGGTATC-GGGTATC-GGGTATC-GGGTATC-GGGTATCDesign primers
4841469CAACCAGGT-CAACCAGGT-CAACCAGGTDesign primers

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