Microsatellites /Tandem Repeats database

Genome: Shigella boydii Sb227

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
37913CTGGCGGTGGCGCTGTCGATGGCGDesign primers
150813TCACCC-TCACCC-TAACCC-TCTCCCDesign primers
615438AGTTAATTATAATATAATTATAAGTTAATTAAADesign primers
621694AGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGDesign primers
836663GATGAA-GATGAA-TATGAA-GATGACDesign primers
946047CAGCA-AATCA-AAGCA-AAGCA-AAGCA-AAGCADesign primers
982584ATGTCGACGAACTTCGACGAATTTCGCCGADesign primers
996973TTCTTGATCTGTATCTTTATCTGTATCTTTATCTGTDesign primers
1081055ACCAGCAACCAGCGACCGGCAGCCAGCADesign primers
1387111AAAATTGTGCAAATTTGTGCACTATTGTGCDesign primers
1777065GCCACCACCGCCTCCGCCACCCGCGCCGCCGCCAGCACCACCACCDesign primers
1966631CTC-CAC-CAG-CAC-CAG-CAC-CAG-CAC-CAG-CAC-CAG-CAC-CAG-CAC-CAG-CACDesign primers
2221572CGTGATCC-GGCAATCC-GGCAATCC-GGCAATCC-GGCAATCC-GGCAATCCDesign primers
2349265CGACCTACT-CCGACTACT-CCGACTACT-CCGACTACT-CCGACTACT-CCGACTACTDesign primers
2471677TGATCGCCGGATGCTGATTGCCGGACGCTGATTGCCGGATGCDesign primers
2523548GAGAAT-GATAAT-GATAAT-GATAATDesign primers
2567736CAGCG-CCACG-CAGCG-CAGCG-CAGCG-CAGCGDesign primers
2699386GTTGTGATGTTGTGTTGTTGTGTTDesign primers
2771654GTATCCG-CTGGGCG-CTGGGCG-CTGGGCG-CTGGGCG-CTGGGCG-CTGGGCG-CTGGGCG-CTGGGCGDesign primers
3003045CCTTTGCTTTCTTTTCCTTGCGTTTDesign primers
3247503TGTTGCCCG-TATTGCCCG-TATTGCCCG-TATTGCCCGDesign primers
3267448AGGTAT-TGATGT-TGATGT-TGATGT-TGATGT-TGATGT-TGATGT-TGATGT-TGATGTDesign primers
3335703TT-TT-TG-TT-TT-AT-TT-TT-TT-GT-TT-TT-AT-TT-TTDesign primers
3339047TGTTGCCCGTATTGCCCGTATTGCCCGDesign primers
3549910CACCAG-CACCAG-CGCCAG-CAGCAGDesign primers
3756558GTGTTGTCTCTGTTGTCTTTGTTGTCTDesign primers
3835837TTGCGG-TGCAGG-TGCAGG-TGCAGG-TGCAGG-TGCAGG-TGCAGG-TGCAGG-TGCAGGDesign primers
3883976TCAGGAA-CGAGGAA-CGAGGAA-CGAGGAA-CGAGGAA-CGAGGAADesign primers
3953774AATGCCAATGGCGATGCCAATTCCDesign primers
4013394CGCGGTAAATCTCGATAAATGGCGGTAATTDesign primers
4172489CCCTCACCCTAACCCTCTCCCTCADesign primers
4313781TATTTATTTAAATTTAGTTAAATTCATTTADesign primers
4361431CATGCCGCCCATGCCACCCATGCCGCCCATACCGCCDesign primers
4385877GCAGCAGCATCAGCAGCGCCAGCADesign primers
4497931AAGCGGCGAAAGCGGTGAAAGCGGCAADesign primers

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