Microsatellites /Tandem Repeats database

Genome: Staphylococcus haemolyticus JCSC1435

Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
47436CTTCAGACAGCGAATCAACATCAGACAGTGAATCACAATCAGATAGCGAATCAACATCAGACAGTGAATCACAATCAGATAGCGAATCAACTTCAGACAGCGAATCAACATCAGACAGTGAATCACAATCAGATAGCGAATCAACTTCAGACAGTGAATCAACTTCAGATAGCGAATCAACTTCAGACAGTGAATCAACTTCAGACAGCGAGTCACDesign primers
47742CTTCAGACAGCGAATCAACATCAGACAGTGAATCACAATCAGATAGCGAATCAACATCAGATAGCGAATCAACTTCAGACAGTGAATCACAATCAGATAGCGAATCAACTTCAGACAGCGAATCAACATCAGACAGTGAATCACAATCAGATAGCGAATCAACATCAGACAGTGAATCACDesign primers
47923ATCAGATAGCGAATCACAATCAGACAGTGAATCACAATCAGATAGCGAATCAACDesign primers
47978TCAGACAGCGAATCAACATCAGACAGTGAATCACAATCAGATAGCGAGTCAACTTCAGATAGCGAATCAACTTCAGACAGCGAATCAACATCAGACAGTGAATCACAATCAGATAGCGAATCAACATCAGACAGTGAATCACAATCAGATAGCGAATCACAATCAGATAGCGAATCAACTTCAGACAGTGAATCAACTTCAGACAGCGAGTCACAATCAGACAGTGAATCACAATCAGATAGCGAGTCAACATCAGACAGTGAATCACAATCAGATAGCGAATCAACTTCAGACAGCGAATCAACATCAGACAGTGAATCACAATCAGATAGCGAATCACAATCAGACAGTGAATCACAATCAGATAGCGAGTCAACATCAGACAGTGAATCAACATCAGACAGCGAGTCACAATCAGATAGCGAATCAACTTCAGACAGTGAATCAACTTCAGACAGCGAGTCACAATCAGATAGCGAGTCAACATCAGACAGTGAATCACAATCAGATAGCGAATCAACATCAGACAGTGAATCACAATCAGATAGCGAGTCAACATCAGACAGTGAATCACAATCAGATAGCGAATCAACATCAGACAGTGAATCAACTTCAGATAGCGAATCACAATCAGATAGCGAATCAACATCAGACAGTGAATCACAATCAGATAGCGAATCAACTTCAGACAGCGAATCACAATCAGATAGCGAGTCAACTTCAGACAGCGAATCACAATCAGATAGCGAGTCAACATCAGACAGTGAATCAACATCAGACAGCGAATCACAATCAGATAGCGAGTCAACTTCAGACAGCGAATCACAATCAGATAGCGAGTCAACATCAGACAGTGAATCAACATCAGACAGCGAGTCACAATCAGATAGCGAATCAACTTCAGACAGTGAATCAACATCAGACAGCGAGTCACAATCAGATAGCGAGTCAACADesign primers
52169TATATTACTTTATTTTATTTTAAACTACTTDesign primers
54061TATTTTATTATATTTGATTTCATTTDesign primers
105435TATTTTTAGTTTTAATTTTCTTTTDesign primers
181125ACAACAAAAGACAATAAAAAACAAGACAAGDesign primers
296616AA-GA-AA-AA-GT-AA-AA-CA-AA-AA-TA-AADesign primers
337588AAAAATAAAAAAGATAAAAAGAATAAADesign primers
501573TCAACTTCATCATCTTCATCAGCTTCADesign primers
783411TTGTAGTTATTATAGTTATTGTAATTADesign primers
856708AAC-AAT-AAT-AAT-AAC-AAC-AAC-AATDesign primers
1021582TGCTTCTGGTTCTGTTTCTACTTCDesign primers
1052350CAA-TAA-CAA-TGA-TAA-TAA-AAA-TAADesign primers
1071633AATTGTAA-TATTGTAA-TATTGTAADesign primers
1080745AATAAAAATAGAAATTAAAATAAADesign primers
1123784TTTGAT-TTTGAT-CTTGAT-CTTGATDesign primers
1361325AATGAATCAAAATTAATGAAAATATATCAADesign primers
1380889ATTAAACATATTAAACGTTTTAAACATDesign primers
1414612TATTTTTATCTTCATTTTTATTTGDesign primers
1457091GGTGCAGCTGGTGCGGCTGGCGCAGCTDesign primers
1696592TTT-GTT-GTT-TTT-ATT-ATT-TTT-ATT-GTT-CTT-ATT-GTT-TTT-GTT-ATT-TTT-ATT-ATTDesign primers
1825043TTTTTTGACGTTTTTAGTCGTTTCTTGAGGDesign primers
2227801ATCTTCATTTTCATCTTGGTCTTCDesign primers
2248981AAAATAAAAATGAAGATAACAATADesign primers
2328830CAAAAAATAAAACAAAATAACAACAAAGAADesign primers
2359042TGGTTT-TGGTTT-AGGTTT-GGGTTT-AGGTTTDesign primers
2424671ATCGGCGTCTGCATCAGCGTCTGAGTCAGCGTCTGCDesign primers
2424726TCTGCGTCGCTATCTGCATCTGCATCGCTGTCCGCATCTGCATCGCTGTCCGCATCTGCGTCACTATCTGCADesign primers
2424822TCGCTATCTGCATCTGCATCACTGTCGGCATCTGCATCACTGTCGGCATCTGCADesign primers
2424877CGCTGTCTGAGTCTGAATCGCTATCTGAATCAGAATCGCTATCTGAATCAGAATCGCTATCTGAGTCTGAATCGCTATCTGAGTCTGAGTCGCTATCTGAGTCTGAATCGCTATCTGAATCAGAATCGCTATCTGAGTCTGAATCGCTATCTGAATCAGAATCGCTATCTGAGTCTGAATCGCTATCTGAATCAGAATCGCTATCTGAGTCTGAATCGCTATCTGAGTCTGAGTCGCTATCTGAGTCTGAGTDesign primers
2568850AATAAG-AATAAG-ATTAAG-AATATGDesign primers
2616920TTTTTTGACGTTTTTAGTCGTTTCTTGAGGDesign primers

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