Microsatellites /Tandem Repeats database

Genome: Vibrio parahaemolyticus BB22OP

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
82320CATCAGTGACC-ATTCAGTGACC-ATTCAGTGACCDesign primers
242420AGAAGTAGACGTAGAAGTAGACGTDesign primers
443783CTTGTG-TCTGTG-TCTGTG-TCTGTG-TCTGTG-TCTGTG-TCTGTG-TCTGTGDesign primers
448335TTGTTGATGTCCTTCGGGAGACTGACGTTGAGGTCCTTCGGGAAACTGACGTTGACGTCCTTCGGGAGACTGDesign primers
465642GATGATG-GTTGATG-GTTGATG-GTTGATG-GTTGATGDesign primers
616212CTAGCCCAA-GTAGCCCAA-GTAGCCCAA-GTAGCCCAA-GTAGCCCAADesign primers
677872AGCAGCA-ATCAGCA-ATCAGCA-ATCAGCADesign primers
840781TTGGGATTGCGATTGTGATTGGGGDesign primers
1196132TATTTTTTCATATCTGTTCATGTTTTTTAADesign primers
1340248AGCAGAAGAAGAAGCAAAAGCAGGDesign primers
1462453AGATTTC-TCGCTTC-TCGCTTC-TCGCTTC-TCGCTTC-TCGCTTC-TCGCTTC-TCGCTTC-TCGCTTC-TCGCTTC-TCGCTTC-TCGCTTC-TCGCTTC-TCGCTTC-TCGCTTCDesign primers
1920644CCTTTAG-CCGTTAG-CCGTTAG-CCGTTAGDesign primers
2276729TCTGGA-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTGDesign primers
2545223TCAGCTTCACGTTTTGCAGCTTCTTCAGCTTCACGCTTAGCAGTTTCCTCTGCTACGCGTTTTGCTGCTTCTTCTGCTTCACGTTTTGCTACTTCTDesign primers
2622073AGCTGCCGCTGCAGGTGCTGCTGCDesign primers
2634581GAGGTTC-TAGGTTC-TAGGTTC-TAGGTTC-TAGGTTCDesign primers
2942687CTGCGCTGCCATGCGGTGCGCTTCGDesign primers
3017156CCACCCATACCGCCCATACCACCCATGDesign primers
3076660AATCAA-TAGAGA-TAGAGA-TAGAGA-TAGAGA-TAGAGA-TAGAGA-TAGAGA-TAGAGA-TAGAGA-TAGAGA-TAGAGADesign primers
3135597AATCAACCAATCAAACAACCAACCDesign primers
3143354GCT-CTT-CTG-CTT-CTG-CTT-CTG-CTT-CTG-CTT-CTG-CTT-CTG-CTT-CTG-CTT-CTG-CTTDesign primers
3199074CCATCT-CAAACT-CAAACT-CAAACT-CAAACT-CAAACTDesign primers

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