Microsatellites /Tandem Repeats database

Genome: Solibacillus silvestris StLB046

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
50526TTTTTCTTAAGATTTCTTAAATTTTTTTAADesign primers
79956TTTTGCATC-TTTTGCATC-TTTTTCATCDesign primers
187080GCCGTTGCCATTGCCATTGCCATTGCCATTGCCATTACCGTTGCCGTTGCCATTGCCATTACCGTTGCCATTDesign primers
302764ACAGATAAAGATGCAGATACAAATDesign primers
438081ATCAATATAATCAATATTAACAATATADesign primers
607863ATAATTATTCAAAGAATGATGGTTATTCAATGAATGATGGCTATTCAAAGAATGDesign primers
609853AAAATCAAAATAAAAACCAAAAACDesign primers
736658AAATAACTTAAAAATACTTAAAATAATATADesign primers
870462TGAAAA-AGAAAA-AGAAAA-TGGAAA-AGAAAADesign primers
885603AT-AA-AA-AA-AT-AA-AT-AA-AT-AA-AT-AADesign primers
904902ATATTTTGATTTTTTGATATTTTTDesign primers
905155GAGC-AAAT-AAAT-AAAT-AAAT-AAAT-AAAT-AAAT-AAAT-AAAT-AAAT-AAATDesign primers
1162735ACAATC-TAAATC-TAAATC-TAAATC-TAAATC-TAAATCDesign primers
1356823AGGTGCAGGTGTAGTTGCAGCTGCDesign primers
1402569AAATAGAAAATAAAGAATAGAGAATAGADesign primers
1573101GCCGAT-GCCAAT-GCCAAT-GCCAAT-GCCGATDesign primers
1573164CATGCC-AATGCC-AATGCC-GATGCCDesign primers
1573362GCCAATGCCGATGCCGATGCAAATGCAAATDesign primers
1748753AAAACAAATAAAACAAATAAAGCAAATDesign primers
1832241AATAT-TGAAT-TAAAT-TAAAT-TAAAT-TAAAT-TAAAT-TAAAT-TAAATDesign primers
2002885ACCACTTCGACCATTTCGACCACTTCADesign primers
2020173ACTTTTTATTAGCTTTGTATTAAATTTTTATTTDesign primers
2328955TATTACATATATTACAAATATTACATGDesign primers
2437809TTCTCC-TTCTCC-TTTTCC-TTCTCT-TTCTTCDesign primers
2437840CTTTATCCATCTCTTTCTTCTCTTTTTCTTTCTCTTTCTTCTCCTTATCCTTCTCTTTCTTCTCTTTTTCTTTCTCTTTCTTCTCCTTATCCTTCTCTTTCTTCTCTTTTTCTTTCTCTTTCTTCTCTTTTTCTTTCTCGTTCTTCTCCTTTTCCTTCTCTTTCTTCTCTTTTTCTTTCTCGTTCTTCTDesign primers
2745146AACGGCAACGGTAATGGAAATAATGGGAACGGGAACGGAAATAACGGCAATGGAAATGGCAACDesign primers
2899543AAGAGAGAGAGAAAGAGTGAGAGAAAGAGGDesign primers
3013423GCCGCCTTTATTTTGTGTGTTACCACCTTTATTTGGCGTGTTACCGCCTCTATTTGGCGTGTTDesign primers
3060331TT-TA-TA-TT-AA-TA-TT-TA-TA-TA-TA-TADesign primers
3102245TTATTAAATTATTATATTAATAAADesign primers
3509638TTCTAATATCTTCTAAATTCTTCTAATATADesign primers
3642108AAATATTTAT-AAATATTTAT-GAATTTTTATDesign primers
3882220TATATATATAAATATATTTATATADesign primers

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