Microsatellites /Tandem Repeats database

Genome: Acidobacterium sp. MP5ACTX9

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
472691AACGGC-AACGGC-AACGGC-AACGGC-AACGGCDesign primers
516386TCAGGGA-TCAGGGA-TCAGGGA-TCAGGGADesign primers
517754AACGGC-AACGGC-AACGGC-AACGGC-AACGGC-AACGGC-AACGGC-AACGGCDesign primers
523398AACGGC-AACGGC-AACGGC-AACGGC-AACGGC-AACGGC-AACGGCDesign primers
524359AGGGAAC-AGGGAAC-AGGGAAC-AGGGAAC-AGGGAAC-AGGGAAC-AGGGAACDesign primers
531473AA-AA-CA-AA-AA-CA-AA-AA-CA-AA-AA-CADesign primers
531620CAACGGCAGCGGCAAATG-CAACGGCAGCGGCAAATG-CAACGGCAGCGGCAAATGDesign primers
534907AACGGC-AACGGC-AACGGC-AACGGC-AACGGC-AACGGC-AACGGC-AACGGC-AACGGCDesign primers
534975CGGCAGCGGCAA-CGGCAGCGGCAA-CGGCAGCGGCAADesign primers
655373CAGGGAG-CAGGGAG-CAGGGAG-CAGGGAG-CAGGGAG-CAGGGAG-CAGGGAG-CAGGGAG-CAGGGAG-CAGGGAG-CAGGGAG-CAGGGAG-CAGGGAG-CAGGGAG-CAGGGAG-CAGGGAG-CAGGGAG-CAGGGAGDesign primers
737335GCCGTT-GCCGTT-GCCGTT-GCCGTTDesign primers
742567TTTGCCGTTGCCGCT-TTTGCCGTTGCCGCT-TTTGCCGTTGCCGCTDesign primers
922211GTTGCTTTTGCC-GTTGCTTTTGCC-GTTGCTTTTGCC-GTTGCTTTTGCC-GTTGCTTTTGCCDesign primers
923911GCCGTT-GCCGTT-GCCGTT-GCCGTT-GCCGTT-GCCGTT-GCCGTTDesign primers
932950GCCGTT-GCCGTT-GCCGTT-GCCGTT-GCCGTT-GCCGTT-GCCGTT-GCCGTT-GCCGTT-GCCGTT-GCCGTTDesign primers
1034006AACAGC-AACAGC-AACAGC-AACAGC-AACAGC-AACAGCDesign primers
1036797AACGGC-AACGGC-AACGGC-AACGGC-AACGGC-AACGGC-AACGGC-AACGGCDesign primers
1134577GTTGCA-GTTGCA-GTTGCA-GTTGCA-GTTGCA-GTTGCADesign primers
1265080GCAACT-GCAACT-GCAACT-GCAACT-GCAACT-GCAACT-GCAACT-GCAACTDesign primers
1407063AACCGC-AACCGC-AACCGC-AACCGCDesign primers
1407186CGCAAC-CGCAAC-CGCAAC-CGCAACDesign primers
1443943AACGGC-AACGGC-AACGGC-AACGGC-AACGGC-AACGGCDesign primers
1833972AACGGC-AACGGC-AACGGC-AACGGC-AACGGC-AACGGC-AACGGC-AACGGCDesign primers
1974866AACCGC-AACCGC-AACCGC-AACCGC-AACCGC-AACCGCDesign primers
2010227AGGGACC-AGGGACC-AGGGACC-AGGGACC-AGGGACC-AGGGACCDesign primers
2091339TGCAAG-TGCAAG-TGCAAG-TGCAAGDesign primers
2113194AACGGC-AACGGC-AACGGC-AACGGC-AACGGCDesign primers
2368468TTGCCG-TTGCCG-TTGCCG-TTGCCGDesign primers
2457550TGCTGTTGCTAT-TGCTGTTGCTAT-TGCTGTTGCTATDesign primers
2457638GTTGCT-GTTGCT-GTTGCT-GTTGCT-GTTGCTDesign primers
2671334AACGGC-AACGGC-AACGGC-AACGGC-AACGGC-AACGGC-AACGGC-AACGGC-AACGGCDesign primers
2933717TTGCCG-TTGCCG-TTGCCG-TTGCCG-TTGCCGDesign primers
2938901CCCTGAA-CCCTGAA-CCCTGAA-CCCTGAA-CCCTGAA-CCCTGAA-CCCTGAADesign primers
2939596GCCGTT-GCCGTT-GCCGTT-GCCGTT-GCCGTTDesign primers
2940251GCCGTT-GCCGTT-GCCGTT-GCCGTTDesign primers
2940315TTGCCG-TTGCCG-TTGCCG-TTGCCG-TTGCCG-TTGCCG-TTGCCGDesign primers
3141989GGCAACGGCGGC-GGCAACGGCGGC-GGCAACGGCGGC-GGCAACGGCGGC-GGCAACGGCGGCDesign primers
3167996TGAGAAC-TGAGAAC-TGAGAAC-TGAGAACDesign primers
3233467CACCACAACCGTCCCCT-CACCACAACCGTCCCCT-CACCACAACCGTCCCCTDesign primers
3405366CCTTGC-CCTTGC-CCTTGC-CCTTGC-CCTTGC-CCTTGC-CCTTGC-CCTTGC-CCTTGC-CCTTGC-CCTTGC-CCTTGC-CCTTGC-CCTTGC-CCTTGC-CCTTGC-CCTTGC-CCTTGC-CCTTGCDesign primers
3747124TAAAAGGTCGTCATACG-TAAAAGGTCGTCATACG-TAAAAGGTCGTCATACG-TAAAAGGTCGTCATACG-TAAAAGGTCGTCATACGDesign primers
3747269TTGCCG-TTGCCG-TTGCCG-TTGCCG-TTGCCG-TTGCCGDesign primers
4059137GCCGTT-GCCGTT-GCCGTT-GCCGTT-GCCGTT-GCCGTT-GCCGTT-GCCGTT-GCCGTT-GCCGTTDesign primers
4134300GCCGTT-GCCGTT-GCCGTT-GCCGTT-GCCGTT-GCCGTTDesign primers

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