Microsatellites /Tandem Repeats database

Genome: Halogeometricum borinquense DSM 11551

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
31699CGGAAGCCGATTCCGGAACTGACG-CAGAAGACGATTCCGGAACTGACG-CAGAAGACGATTCCGGAACTGACG-CAGAAGACGATTCCGGAACTGACG-CAGAAGACGATTCCGGAACTGACGDesign primers
57425CCATACAGG-CCATACAGG-CCATACAGGDesign primers
70237TCGTCGTCAGTGATCCGTCGTCGTCAGTGATTCGTCGTCGTCAGTGATCCGDesign primers
91547CTGCATCTG-CTGCATCTG-CTGCATCTGDesign primers
190750AAT-AAT-AAC-AAT-AAC-AAT-AAC-AAT-AAC-AAT-AAC-AAT-AAC-AAT-AAC-AAT-AAC-AAT-AAC-AATDesign primers
192753CGGTTCGATAACTGACTGCTGTTC-GAGTTCGATAACTGACTGCTGTTC-GAGTTCGATAACTGACTGCTGTTCDesign primers
253513CGTTATCGCGTCGTTACCGCGTCGTCATCGCGTDesign primers
486344ACAGCCGTACTCGTTGTT-ACTGCCGTACTCGTTGTT-ACTGCCGTACTCGTTGTT-ACTGCCGTACTCGTTGTT-ACTGCCGTACTCGTTGTTDesign primers
491094CTCGTTCGTCTCGACGGCTACTCGTGGGTCTCGACGGCTACTCGTGGGTCTCGACGGCTADesign primers
597347TGTTCCACTCGTACCGCTCTCCTGCCCCACTCGTACCGCTCTCCTGCCCCACTCGTACCGCTCTCCDesign primers
618081CACCGATTCAGCGTCGGTCACCGATTCCGCGTCGGTCACCGATTCAGCGTCGGTDesign primers
625107TACGGGACCGTGAGTTCTTGCGGGACCGTGAGTTCTTGCGGGACCGTGAGTTCTDesign primers
710480AT-AT-AT-AT-AT-AT-AT-AT-AT-AT-AT-AT-ATDesign primers
728569TGCTTTGGTCCTGACTC-CGCTTTGGTCCTGACTC-CGCTTTGGTCCTGACTC-CGCTTTGGTCCTGACTCDesign primers
892666ACCGTCTCCGCTTCG-GCCGTCTCCGCTTCG-GCCGTCTCCGCTTCGDesign primers
1035523TAGAT-GAGAT-GAGAT-GAGAT-GAGAT-GAGATDesign primers
1060049AGTCTGAATCCAAGTCGAGGCTGAATCCAAGTCGAGGCTGAATCCAAGTCGDesign primers
1301278TCAGAA-CCAGAA-CCAGAA-CCAGAA-CCAGAA-CCAGAADesign primers
1385144GCTCTCTCCCGTTCTCTCCCGTTCTCTCCCDesign primers
1392248CCTCGGACGACGCTTCGACCCCCTCGGACAACGCTTCGACCTCCTCGGACGACGCTTCGGACCDesign primers
1543355CTGTTC-CTGTTC-CTGTTC-CTGTTC-CTGTTCDesign primers
1696006CGCGGTTCCCCGCGATTCCCCGCGGTTCCCDesign primers
1950421GACGGTCACCGCGGTCATGAC-GACGGTCACCGCGGTCATGAC-GACGGTCACCGTGGCCATGACDesign primers
1983404GAGCGCGTCATCCGTTC-GAGCGCATCATCCGTTC-GAGCGCATCATCCGTTC-GAGCGCATCATCCGTTCDesign primers
2465482CCGACTGACGAAGTGACCGACACG-CCGACTGACGAAGTGACCGACACG-CCGACCGATGAAGTGACCGACACGDesign primers
2616967GGCGGCATG-GGCGGCATG-GGCGGCATGDesign primers
2708880GAGCGGAAGCGGTGCGGAGGCAG-AGGCGGAAGCGGTGCGGAGGCAG-AGGCGGAAGCGGTGCGGAGGCAGDesign primers

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