Microsatellites /Tandem Repeats database

Genome: Leptothrix cholodnii SP-6

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
35559GCGGGA-GCGGGA-GCGGGA-GCGGGADesign primers
35586GGGGCA-GGGGCA-GGGGCA-GGGGCA-GGGGCADesign primers
248291CTGACGCC-CTGACGCC-CTGACGCC-CTGACGCCDesign primers
422864GCGCCCGCCAAGGCGCCCGCGAAGGCGCCTGCCAAGDesign primers
518454GGCCGGTGC-GGCCGGTGC-GGCCGGTGCDesign primers
532395GAAACGCCAGGG-AAAACGCCAGGG-AAAACGCCAGGGDesign primers
541600CGCAGA-CGCAGA-CGCAGA-CGCAGADesign primers
607872GTGTGTCGG-GTGTGTCGG-GTGTGTCGG-GTGTGTCGGDesign primers
808432CGCTTTCTG-CGCTTTCTG-CGCTTTCTGDesign primers
1374031AGCGGGTTC-AGCGGGTTC-AGCGGGTTCDesign primers
1376768TCCGCCCGC-TCCGCCCGC-TCCGCCCGCDesign primers
2143749TCGGGGCAGCCATCGGGGCAGCAACCGGGGCAGCCADesign primers
2422466GCCGTTACCCCGGCGTTACCCCGGCGTTACCCCDesign primers
2999198CGCATCAGCGCCGGATCAGCGCCGGATCAGCGCDesign primers
3289145GCACAAACC-GCACAAACC-GCACAAACCDesign primers
3419782GGCGTCGGAGCGGGTGCCGGTGCGGGCGTCGGAGCGGGTGCCGGTGCAGGCGTCGGCGCCGGTGCCGGTGCGDesign primers
3575627CGCTGCTGGTGGCGCTGCTGCTGGCGCGGCTGGTGGDesign primers
4150002CTTGACCGGCGCCTTGGCCGGCGCCTTGACCGGTGCDesign primers
4359295GCCACC-GCCACC-GCCACC-GCCACCDesign primers
4604628GCCGGC-ACCGGC-ACCGGC-ACCGGC-ACCGGC-ACCGGCDesign primers

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