Microsatellites /Tandem Repeats database

Genome: Bordetella petrii

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
361272TGACACCTGGCAGTAG-CGACACCTGGCAGTAG-CGACACCTGGCAGTAGDesign primers
502659ACCCCCCGCAAACCCGA-CCCCCCCGCAAACCCGA-CCCCCCCGCAAACCCGADesign primers
639012GCGGCAGGCTTCTTGGCGGCAGCCTTCTTGGCGGCAGGCTTCTTCDesign primers
921312TTGG-TTGT-TTGT-TTGT-TTGT-TTGT-TTGT-TTGT-TTGTDesign primers
970855TGGCGTGTAATTGC-GGGCGTGTAATTGC-GGGCGTGTAATTGC-GGGCGTGTAATTGCDesign primers
1339570TTTTGCTTAAGC-TTTTGCTTAAGC-TTTTGCTTATGCDesign primers
1822649CTGTGGCTGTAG-CTGTGGCTGTAG-CTGTAGCTGTAG-CTGTGGCTGTGG-CTGTGGCTGTGGDesign primers
2375795CAGATTTCGTTGGA-CAGGTTTCGTTGGA-CAGGTTTCGTTGGA-CAGATTTCGTTGGADesign primers
2508140TTCACGTACG-TTCACGTACG-TTCAGGTACGDesign primers
2580531GCCCCG-GCCCCG-GCCCCT-GCCCCG-GCCCCT-GCCCCGDesign primers
2587395CTGGCCAACCACGCCCCGGCT-CTGGCCAACCACGCCCCGGCT-CTGGCCAACCATGCTCCGGCTDesign primers
2636078AGGTAAGCCAGGTAACGCAGGTAAGACAGGTAACGCAGGTAAGACAGGTAACGCDesign primers
2636234ACACCTGGCAA-ATACCTGGCAA-ATACCTGGCAA-ATACCTGGCAA-ATACCTGGCAADesign primers
2698005TTCGGTCTGGTCCGA-TCCGGTCTGGTCCGA-TCCGGTCTGGTCCGA-TCCGGTCTGGTCCGADesign primers
2765541ACTTCTGGTTT-ACTTCTGGTTT-ACTTCTGGTCTDesign primers
2954223GCTGCATCGACCGCTGCGGCATCGACCGCTGCGGCATCGACCGCTDesign primers
2990718GCACCGGTAGTGCCTGCT-GCACCGGTAGTGCCTGCT-GCACCGGTACTGCCTGCTDesign primers
3074324CAGGCTGGTGTCGCAGGCAGGTGTCGCAGGCTGGTGTCACAGGCAGGTGTCGCAGGCTGGTGTCACAGGCTGGTGTCADesign primers
3075725AAGCGCCTGGCA-ATGCGCCTGGCA-ATGCGCCTGGCA-ATGCGCCTGGCADesign primers
3197304GACCTGCCCGCGAATCGACCTACCCGCGAATCGACCTGCCCGCGAACCDesign primers
3427882GCCCAAGCATTGCCCAGGCATTGCCCAGGCATTDesign primers
3639476ATGACAAAGCCCCGTATGACAAAACCCCGTATGACAAAGCCCCGCDesign primers
3668502GCCCGCGCCGTCGAG-CCCCGCGCCGTCGAG-CCCCGCGCCGTCGAGDesign primers
3748527CCCGCGCTATTTGCA-CCTGCGCTATTTGCA-CCTGCGCTATTTGCA-CCTGCGCTATTTGCA-CCTGCGCTATTTGCADesign primers
3776351AGACCGCCGCCAAAGACAGCCGCCAAAGACAGCCGCCAADesign primers
3783257CACGCGCACTGAATCCATGCGCACTGAATCCATGCGCACTGAATCDesign primers
3808248GCGCCCTGCAA-CCGCCCTGCAA-CCGCCCTGCAADesign primers
3892424GACGCCGCCTGACGCAGCCTGACGCGGCCTDesign primers
3908050GTCAGGTGTCAGGCTCCCTATCCAGCCAGGTGTCAGGCTCCCTACCCAGCCAGGTGTCAGGCTCCCTACCCADesign primers
3908603CAGGCTTCCTTTTCGCCAGGCGT-CAGGCTTCCTTTTCGCCAGGCGT-CAGGCTTCCTTTTTGTCAGGCGTDesign primers
4148167GGCGGCATG-GGCGGCATG-GGCGGCATGDesign primers
4234738GCCCGAGGAAG-GCCCGAGGAAG-GCCCGAGAAAG-GCCCGAAGAAG-GCCCGAGGAAGDesign primers
4441405TCGCCGATT-TCGCCGATT-TCGCCGATTDesign primers
4705735CCTGACCTGGC-ACTGACCTGGC-ACTGACCTGGCDesign primers
4721418GGCGCT-GGCGCT-GGCGCT-GGCGCTDesign primers
4761742CAGACACCTGTGGGGCTCGTCAGACAACTGTGGGGGTCGTCAGACACCTGTGGGGCTCGTDesign primers
4771102TGGTGCAGTGCTGGTGCTGTGCTGGTGCTGTGCTGATGCAGTGCDesign primers
5023890CAGGTGTCTGGTCAGGTGTCTGGCCAGGTGTCTCGTDesign primers
5039915CGCCGTGGATACCCTTG-CGCCGTGGATACCCTTG-CGCCGCGGATACCCTTGDesign primers
5140054GCACGG-GCACGG-GCACGG-GCACGG-GCACGGDesign primers

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