Microsatellites /Tandem Repeats database

Genome: Burkholderia vietnamiensis G4

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
146478TCACGA-GCACGA-GCACGA-GCACGA-GCACGA-GCACGA-GCACGA-GCACGADesign primers
146527CACGAC-CACGAC-CACGAC-CACGACDesign primers
148836GCGGCTCAC-ACGGCTCAC-ACGGCTCAC-ACGGCTCAC-ACGGCTCAC-ACGGCTCAC-ACGGCTCAC-ACGGCTCACDesign primers
149271GCCGGCAG-ACCGGCAG-ACCGGCAG-ACCGGCAG-ACCGGCAG-ACCGGCAGDesign primers
162533CTTCCAGCCGTACCTCCAGCCGTACCTCCAGCCGTADesign primers
162570CTTCCAGCCGTA-CCTCCAGCCGTA-CCTCCAGCCGTA-CCTCCAGCCGTA-CCTCCAGCCGTA-CCTCCAGCCGTA-CCTCCAGCCGTA-CCTCCAGCCGTA-CCTCCAGCCGTA-CCTCCAGCCGTA-CCTCCAGCCGTA-CCTCCAGCCGTA-CCTCCAGCCGTA-CCTCCAGCCGTA-CCTCCAGCCGTA-CCTCCAGCCGTA-CCTCCAGCCGTA-CCTCCAGCCGTA-CCTCCAGCCGTA-CCTCCAGCCGTA-CCTCCAGCCGTADesign primers
176182CCGTCGG-CAGACGG-CAGACGG-CAGACGG-CAGACGG-CAGACGG-CAGACGG-CAGACGG-CAGACGG-CAGACGG-CAGACGG-CAGACGGDesign primers
176270CGGCAGG-CGGCAAG-CGGCAAG-CGGCAAG-CGGCAAG-CGGCAAGDesign primers
249044CGCGGTATTCCGCGCTATTCCGCGGTATTCDesign primers
249925CAGCGGCGGCGGCAGCGGCGGCAGCAGTGGCGGCGGDesign primers
252632GCCGCCTCA-GCCGCCTCA-GCCGCCTCA-GCCGCCTCADesign primers
252669CCTCAG-CCTCAG-CTTCAG-CCTCAG-CCTCAG-CCTCAG-CCTCAG-CCTCAGDesign primers
292601ATCCGCA-ATCCGCA-ATCCGCA-ATCCGCADesign primers
435235CAAGCTGCACTGA-GAAGCTGCACTGA-GAAGCTGCACTGA-GAAGCTGCACTGADesign primers
546769TCGATCTCCGA-CCGATCTCCGA-CCGATCTCCGADesign primers
692661TGAGGCCGAG-TGCGGCCGAG-TGCGGCCGAG-TGCGGCCGAGDesign primers
693809TCGACAG-CCGACAG-CCGACAG-CCGACAG-CCGACAG-CCGACAG-CCGACAG-CCGACAGDesign primers
693871GCCGACC-GCCGACA-GCCGACA-GCCGACA-GCCGACC-GCCGACC-GCCGACC-GCCGACCDesign primers
693954CGCCCAAG-CGCCCAAG-CGCCCAAG-CGCCCAAG-CGCCCAAGDesign primers
693995GCCCAAGT-GCCCAAGT-GCCCAAGT-GCCCAAGT-GCCCAAGT-GCCCAAGT-GCCCAAGT-GCCCAAGT-GCCCAAGT-GCCCAAGT-GCCCAAGTDesign primers
722179ACCGAACGA-GCCGAACGA-GCCGAACGA-GCCGAACGA-GCCGAACGA-GCCGAACGA-GCCGAACGA-GCCGAACGA-GCCGAACGA-GCCGAACGADesign primers
722270CCGAACGCA-CCGAACGCA-CCGAACGCA-CCGAACGCADesign primers
722315CCGAATGCA-CCGAATGCA-CCGAATGCA-CCGAATGCA-CCGAATGCADesign primers
725990CGATCAAC-CGATCAAC-CGATCAAC-CGATCAACDesign primers
737303GCGACACGA-ACGACACGA-ACGACACGA-ACGACACGA-ACGACACGA-ACGACACGADesign primers
751375GCGGCGGTGAAACGGCGGTGAAGCGGCGGTGAGACGGCGGTGAADesign primers
760964ACTGAACCGG-CCTGAACCGG-CCTGAACCGGDesign primers
793260CAAGCACCT-CAAGCACCT-CAAGCACCTDesign primers
793314CAAGCACCC-GAAGCACCC-GAAGCACCC-GAAGCACCC-GAAGCACCC-GAAGCACCC-GAAGCACCC-GAAGCACCC-GAAGCACCC-GAAGCACCC-GAAGCACCC-GAAGCACCC-GAAGCACCC-GAAGCACCCDesign primers
803087GGACGAAGT-GGACGAAGT-GGACGAAGT-GGACGAAGTDesign primers
844373GCCCGAGA-GCCCGAGA-GCCCGAGA-GCCCGAGADesign primers
844406CCCAAAAG-CCCAAAAG-CCCAAAAG-CCCAAAAG-CCCAAAAG-CCCAAAAG-CCCAAAAGDesign primers
1239939GCGCGATGGTGGGCGATGGTGCGTGATGGTGCGTGATGGTDesign primers
1315561TGGTTG-CCGTTG-CCGTTG-CCGTTG-CCGTTG-CCGTTG-CCGTTG-CCGTTG-CCGTTG-CCGTTG-CCGTTG-CCGTTG-CCGTTG-CCGTTG-CCGTTG-CCGTTGDesign primers
1330784AATGCGGCCCG-TATCCGGCCCG-TATCCGGCCCG-TATCCGGCCCG-TATCCGGCCCG-TATCCGGCCCG-TATCCGGCCCG-TATCCGGCCCGDesign primers
1342305CGCGCGGCAACCCGCGGCAACCCGCGGCAADesign primers
1345476CCGACACGA-CCGACACGA-CCGACACGA-CCGACACGADesign primers
1367206GCGTTCG-GCGTTCG-GCGTTCG-GCGTTCGDesign primers
1473339AGCCCC-AGCCCC-AGCCCC-AGCCCCDesign primers
1473461CCGCCGCGCCAGCCCCCACCGCGCCAGCCCCCACCGCGCCAGCCCDesign primers
1496247CATACCGACGA-CCAACCGACGA-CCAACCGACGA-CCAACCGACGA-CCAACCGACGA-CCAACCGACGA-CCAACCGACGA-CCAACCGACGA-CCAACCGACGA-CCAACCGACGADesign primers
1496361CCGACGACCAG-CCGACGACCAG-CCGACCACCAGDesign primers
1623225GCGCCGCTCGTGCCACCCGTGCCGCTCGTGCCACCCGTGCCGCTCGTGCCACCCDesign primers
1728132GGGCACGGCGGT-AGGCACCGCGGT-AGGCACGGCGGT-AGGCACGGCGGT-AGGCACGGCGGT-AGGCACCGCGGTDesign primers
1907749CGTTCAATGCGGTTCAATGCAGTTCAATGCDesign primers
1908995GGTTCGATGCCGTGGATT-GGTCCGATGCCGTGGATT-GGTCCGATGCCGTGGATT-GGTCCGATGCCGTGGATTDesign primers
2134912CGTACGGT-CGTACGGT-CGTACGGT-CGTACGGTDesign primers
2324991CCACGT-CCACGT-CCACGT-CCACGTDesign primers
2505942GTCACATGAGCGTCACATGCGCGTCACATGCGCDesign primers
2628949GGTGTCGTC-GGTGTCGTC-GGTGTCGTC-GGTGTCGTCDesign primers
2628986GTGCCGCTG-GTGCCGCTG-GTGCCGCTGDesign primers
2634129ATCTCTTCA-ATCTCTTCA-ATCTCTTCADesign primers
2669306GGGGCTCG-GGGGCTCG-GGGGCTCG-GGGGCTCG-GGGGCTCGDesign primers
2669347GACTCTCGG-GACTCTCGG-GACTCTCGG-GACTCTCGG-GACTCTCGG-GACTCTCGG-GACTCTCGG-GACTCTCGGDesign primers
2684977GCGCTGTCGT-CCGCTGTCGT-CCGCTGTCGTDesign primers
2784653CGGTGCT-TGGTGCT-TGGTGCT-TGGTGCT-TGGTGCT-TGGTGCTDesign primers
2943779CGCCTCGCC-CGCCTCGCC-CGCCTCGCC-CGCCTCGCCDesign primers
2943816GCCTCGTCC-ACCTCGTCC-GCCTCGTCC-GCCTCGTCC-GCCTCGTCC-GCCTCGTCC-GCCTCGTCC-GCCTCGTCC-GCCTCGTCC-GCCTCGTCC-GCCTCGTCC-GCCTCGTCC-GCCTCGTCC-GCCTCGTCC-GCCTCGTCC-GCCTCGTCC-GCCTCGTCC-GCCTCGTCC-GCCTCGTCC-GCCTCGTCCDesign primers
2947415GCTGGTTGGGCCTC-GCTGGTTGGGCCTC-GCTGGTTGGACCTCDesign primers
2947464GGGCCTCGCTGGTTGGACCTCGCTGGTTGGACCTCGCTGGTTDesign primers
2947507GACCTCGCTGGTCGGGCCTCGCTGGTCGGGCCTCGCTGGTCGDesign primers
2990017GTCTGATTCGCCGCCTGATTCGCCGCCTGATTCGCCDesign primers
3046518GAGGCCGCA-GAGGCCGCA-GAGGCCGCADesign primers
3083493CGGCTGGT-CGGCTGGT-CGGCTGGTDesign primers
3099067CGGGCCT-CGGGCCT-CGGGCCT-CGGGCCTDesign primers
3119496CACCGCCT-CACCGCCT-CACCGCCT-CACCGCCTDesign primers
3162340AGGCGTT-GGGCGTT-GGGCGTT-GGGCGTT-GGGCGTT-GGGCGTT-GGGCGTT-GGGCGTTDesign primers
3162397GGGCGTTC-GGGCGTTC-GGGCGTTC-GGGCGTTC-GGGCGTTC-GGGCGTTC-GGGCGTTC-GGGCGTTCDesign primers
3162462GGCGGTTCG-GGCGGTTCG-GGCGGTTCG-GGCGGTTCGDesign primers
3248114GCGGTGA-GCGGTGA-GCGGTGA-GCGGTGA-GCGGTGADesign primers
3284870TCGTTCTTCGCTGTCCTTCGCTCTTCGCTGTCCTTCGCTCTTCGCTGTCCTDesign primers
3285505CGGCTC-TGGCTC-TGGCTC-TGGCTC-TGGCTC-TGGCTC-TGGCTC-TGGCTCDesign primers
3299650GCGCGTG-CCGTGTG-CCGTGTG-CCGTGTG-CCGTGTG-CCGTGTG-CCGTGTG-CCGTGTG-CCGTGTGDesign primers
3312016CTGTCGAT-CCGTCGAT-CCGTCGAT-CCGTCGAT-CCGTCGAT-CCGTCGATDesign primers
3312075TCGAGCCA-TCGAGCCA-TCGAGCCA-TCGAGCCADesign primers
3312120CTGTACGG-CTGTACGG-CTGTACGGDesign primers
3325735GCCGCGTCGAGCCGCATCGAGCCGCATCGADesign primers
3341850GCGCCGC-GCATCGC-GCATCGC-GCATCGC-GCATCGC-GCATCGC-GCATCGC-GCATCGC-GCATCGCDesign primers
3341914CATCTCG-CATCTCG-CATCTCG-CATCTCG-CATCTCG-CATCTCG-CATCTCGDesign primers
3342026CGCTTCA-CGCTTCA-CGCTTCA-CGCTTCA-CGCTTCA-CGCTTCA-CGCTTCA-CGCTTCA-CGCTTCA-CGCTTCADesign primers
3342097GCTCCAC-GCTCCAC-GCTCCAC-GCTCCACDesign primers
3342126CTTCACG-CTTCACA-CTCCACG-CTTCACG-CTTCACG-CTTCACG-CTTCACG-CTTCACG-CTTCACGDesign primers
3370719GCTCTGCCT-GCTCTGCCT-GCTCTGCCTDesign primers
3430401GGCGGCGTT-GGTGGCGTT-GGTGGCGTT-GGTGGCGTT-GGTGGCGTT-GGTGGCGTT-GGTGGCGTT-GGTGGCGTTDesign primers
3471531CGCGTGAGGTG-CGCGTGAGGTG-CGCGTCAGGTGDesign primers

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