Microsatellites /Tandem Repeats database

Genome: Xanthomonas oryzae pv. oryzae MAFF 311018

Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
160790GGGGGAT-TCGGGAT-TCGGGAT-TCGGGAT-TCGGGAT-TCGGGAT-TCGGGAT-TCGGGAT-TCGGGAT-TCGGGAT-TCGGGAT-TCGGGATDesign primers
324480TGACGCA-CAACGCA-CAACGCA-CAACGCA-CAACGCA-CAACGCA-CAACGCA-CAACGCA-CAACGCA-CAACGCA-CAACGCA-CAACGCA-CAACGCA-CAACGCA-CAACGCADesign primers
375244ATGACC-ATGACC-ATGACC-ATGACCDesign primers
581448CGCGC-CGTGC-CGTGC-CGTGC-CGTGC-CGTGCDesign primers
664559CTGCCTG-CTGCCTG-CTGCCTG-CTGCCTGDesign primers
698121GGCCAGCCACAAGCCCAGCCACAAGCCCAGCCACAADesign primers
849964CGATTCC-CGATTCC-CGATTCC-CGATTCC-CGATTCCDesign primers
888234CGATTCC-CGATTCC-CGATTCC-CGATTCCDesign primers
958668CCGTGGCA-CCGTGGCA-CCGTGGCADesign primers
958982GTCGCCGACATT-GTCGCCGACATT-GTCGCCGACGTTDesign primers
1024899AATCGTC-AATCGTC-AATCGTC-AATCGTCDesign primers
1258352CGCCCAGCTACA-CGCCCAGCTACA-CGCCAAGCTACA-CGCCAAGCTACADesign primers
1315975CGATAC-CGATAC-CGATAC-CGATACDesign primers
1322674GGGATTT-GGCATTC-GGGATTC-GGGATTC-GGGATTC-GGGATTC-GGGATTC-GGGATTC-GGGATTCDesign primers
1409406TTAATCG-GGAATCG-GGAATCG-GGAATCG-GGAATCG-GGAATCG-GGAATCG-GGAATCG-GGAATCG-GGAATCG-GGAATCG-GGAATCGDesign primers
1510449CATGACCGG-CATGACCGG-CATGACCGGDesign primers
1514566CATGACCGG-CATGACCGG-CATGACCGGDesign primers
1549089TGGCC-AGGGC-AGGGC-AGGGC-AGGGC-AGGGC-AGGGC-AGGGC-AGGGC-AGGGC-AGGGC-AGGGC-AGGGC-AGGGC-AGGGC-AGGGCDesign primers
1680063TTTACGA-TTCCCGA-TTCCCGA-TTCCCGA-TTCCCGA-TTCCCGA-TTCCCGA-TTCCCGA-TTCCCGA-TTCCCGA-TTCCCGA-TTCCCGADesign primers
1783449CTGCCGA-ATCCCGA-ATCCCGA-ATCCCGA-ATCCCGA-ATCCCGA-ATCCCGA-ATCCCGA-ATCCCGADesign primers
1833083ATCGGCATCG-TTCGGCATCG-TTCGGCATCGDesign primers
2143374GCTGCG-GCTGCG-GCTGCG-GCTGCGDesign primers
2212321GCGCCACC-GCGCCACC-GCGCCACCDesign primers
2360582ATCTCG-ATCTCG-ATCTCG-ATCTCG-ATCTCGDesign primers
2583623ACATCG-ACATCG-ACATCG-ACATCGDesign primers
2616054ACCAATC-CCCAATC-CCCAATC-CCCAATC-CCCAATC-CCCAATCDesign primers
2622140GCGGTAA-GCGGTAA-GCGGTAA-GCGGTAA-GCGGTAADesign primers
2743655GGCTGTGC-GGCTGTGC-GGCTGTGC-GGCTGTGCDesign primers
2763806GGGAATC-GGGAATC-GGGAATC-GGGAATCDesign primers
2938625GGTCCAGCCGGCCGGGATCCAGCCGGCCGGGGTCCAGCCGGCCGGGGTCCAGCCGGCCGGDesign primers
3054884CATGCAGCG-CATGCAGCG-CATGCAGCGDesign primers
3158721GGCGGTA-GGCGGTA-GGCGGTA-GGCGGTA-GGCGGTADesign primers
3158757GCGGATGGCGGTAGGCGGATGGCGGATGGCGGATGGCGGATGGCGGATGGCGGTAGGCGGTAGDesign primers
3158821CGGTAGG-CGGATGG-CGGATGG-CGGATGG-CGGATGG-CGGATGG-CGGATGG-CGGATGG-CGGATGGDesign primers
3302362GTCGGT-GTCGGT-GTCGGT-GTCGGTDesign primers
3312102GGCAGT-GGCAGT-GGCAGT-GGCAGTDesign primers
3496283CATTCGG-GATTCGG-GATTCGG-GATTCGG-GATTCGG-GATTCGGDesign primers
3515499GGGAGTT-GGGAGTT-GGGAGTT-GGGAGTT-GGGAGTTDesign primers
3592471GGCCG-GGCCG-GGCCG-GGCCG-GGCCGDesign primers
3650764AGGTTGCGGTTGCGC-TGGTTGCGGTTGCGC-TGGTTGCGGTTGCGCDesign primers
3889677CACCGC-CACCGC-CACCGC-CACCGCDesign primers
3973008TGCGTGTTG-TGCGTGTTG-TGCGTGTTGDesign primers
3973094AGCG-AGCG-AGCG-AGCG-AGCG-AGCGDesign primers
4074286CGGGAGT-CGGGAGT-CGGGAGT-CGGGAGTDesign primers
4119066TCGCGGCGGTCG-TCACGGCGGTCG-TCACGGCGGTCG-TCACGGCGGTCGDesign primers
4166734ATGTCG-ATGTCG-ATGTCG-ATGTCGDesign primers
4285545AAACCG-ACACCG-ACACCG-ACACCG-ACACCG-ACACCGDesign primers
4285587ACACCA-ACGCCA-ACCCCA-ACGCCA-ACGCCA-ACGCCADesign primers
4356796GCTGAG-CCTGAG-CCTGAG-CCTGAG-CCTGAG-CCTGAG-CCTGAG-CCTGAGDesign primers
4356861GCGG-GCGG-GCGG-GCGG-GCGG-GCGG-GCGGDesign primers
4430152GGCGACT-GGCGACT-GGCGACT-GGCGACTDesign primers
4536535GGCCGG-TGCCGG-TGCCGG-TGCCGG-TGCCGG-TGCCGGDesign primers
4743293AAATCAGCTC-AAATCAGCTC-AAATCGGCTCDesign primers
4790132GGGTATC-GGGTATC-GGGTATC-GGGTATC-GGGTATCDesign primers
4841469CAACCAGGT-CAACCAGGT-CAACCAGGTDesign primers

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